Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 761 a.a., DNA helicase II from Magnetospirillum magneticum AMB-1

 Score =  382 bits (980), Expect = e-110
 Identities = 252/647 (38%), Positives = 364/647 (56%), Gaps = 27/647 (4%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q +AV    GP LVL+GAG+GKT+V+T+++A+++     +     AVTFTN+AARE
Sbjct: 36  LNPEQFQAVTTTDGPVLVLSGAGTGKTKVLTSRLAHILASNLAQPWQCLAVTFTNRAARE 95

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-LT 121
           MKERV Q +G   S G+ + TFH+L L I+R   +A+GL   F++ D  DQ+ +LK+ + 
Sbjct: 96  MKERVGQLVGP-VSDGIWLGTFHSLCLRILRSHAEAVGLGGDFTVLDSDDQMRVLKQVMA 154

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
           E  +D      + L++TI  WK+  +TP +A A    E Q      +  YQ +++S NA 
Sbjct: 155 EAHVDPKGTPPQGLMATIQRWKDRAVTPDKAAADGGAEGQA--KTLYRAYQDRLRSLNAC 212

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVG 241
           DF DL+L  + +  S+ E   RWQ R RYLLVDEYQDTN +QY  ++LL      +  VG
Sbjct: 213 DFGDLLLHVLTVFLSDAEALARWQGRFRYLLVDEYQDTNVAQYLWLRLLAQTHRNICCVG 272

Query: 242 DDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKA 301
           DDDQSIYSWRGA+  N++   +DFP  K+++LE NYRST  IL AA+ LIANN     K 
Sbjct: 273 DDDQSIYSWRGAEVGNILRFEKDFPGAKVVRLESNYRSTPHILAAASTLIANNEGRLGKT 332

Query: 302 LFSELA-EGEKLKVILANNE-DHEAE-RVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLI 358
           L   +  E E ++ I      D EAE R++AE I        +    AIL R   Q+R  
Sbjct: 333 LRPGIIHEPEAIEKIRTKAVWDGEAEARMVAEEIETLQRRGEKLSSMAILVRAGFQTREF 392

Query: 359 EKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATL 418
           E+ L    +PY++ GG  F+ R EI+D MAYLR++V+  D  AF R+VNTPKR +G A +
Sbjct: 393 EERLITTGIPYRVIGGPRFYERLEIRDAMAYLRLVVSAADGLAFERVVNTPKRGLGEAAV 452

Query: 419 EKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRA 478
           + +   A      L  A+  L     L  +  + L RF E +       E     E    
Sbjct: 453 QTIHMVARAEQVPLLEAARRLVDTDELKPKARQALARFIEDVDRWRSLLESMPHPELAAT 512

Query: 479 LVRDIRYED-WLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLT 537
           ++ +  Y D W  + SA    A  R++N+ +L    VA LE      +  +L   ++ + 
Sbjct: 513 ILDESGYVDMWKADKSAD---APGRVENLKEL----VAALE------EYDSLASFLEHVA 559

Query: 538 LRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDE---ENVEEE 594
           L  +ME  +   D D+V +MTLH +KGLEF  V+L G EE + PH  ++ E   + +EEE
Sbjct: 560 L--VME-NDSRADLDSVVIMTLHGAKGLEFDSVFLPGWEEEVFPHSRALAESGTKGLEEE 616

Query: 595 RRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIE 641
           RRL YVG+TRA++ +       RR + +      SRF++ELP+  +E
Sbjct: 617 RRLAYVGLTRARKRVLVSFAANRRIYNQWKSQLPSRFVEELPESHVE 663