Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 723 a.a., DNA helicase II from Alteromonas macleodii MIT1002

 Score =  359 bits (921), Expect = e-103
 Identities = 239/652 (36%), Positives = 350/652 (53%), Gaps = 18/652 (2%)

Query: 2   KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
           +LN +Q EAV       LVLAGAGSGKTRV+ ++IA+L++       +I AVTFTNKAA+
Sbjct: 9   ELNDKQREAVAAPLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVTFTNKAAK 68

Query: 62  EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
           EM+ R+   +G+     + + TFH L   ++R       L   F + D  DQ  L++ + 
Sbjct: 69  EMRGRIESLMGRS-LHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLIRRIL 127

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
           +     +K      +    N   D    PQ         Q      +  YQ        +
Sbjct: 128 KAMNLDEKHWAPRQIQWYINGNKDEGLRPQHIETHGDHIQKTMREVYAAYQDACDRSGLV 187

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLV-GERGRLTVV 240
           DF +L+L    L   N EV   +Q R R +LVDE+QDTN  QY  +++L  G    + +V
Sbjct: 188 DFAELLLRAHELWAKNPEVLAHYQRRFRAVLVDEFQDTNNIQYAWLRMLCSGGNNNIMIV 247

Query: 241 GDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQK 300
           GDDDQSIY WRGA   N+    +DF     I+LEQNYRST  IL+AAN +I NN     K
Sbjct: 248 GDDDQSIYGWRGANVDNIQHFLKDFNEPTTIRLEQNYRSTGNILKAANTVIDNNTGRLGK 307

Query: 301 ALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNR-TEYRDYAILYRGNHQSRLIE 359
            L++E A+GE + V    NE  EA  ++++I    +LN+     D AILYR N QSR++E
Sbjct: 308 ELWTEDAQGELISVYAGFNELDEARFIVSKI--KDWLNQGNALTDTAILYRNNAQSRVLE 365

Query: 360 KSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLE 419
           ++L    + Y++ GG  FF R EIKD + Y+R++ +P DD AF R+VNTP R IG  TL 
Sbjct: 366 EALLHEGLAYRIYGGLRFFERQEIKDALGYMRMVSHPHDDAAFERVVNTPSRGIGEKTLS 425

Query: 420 KLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNA-ERGNTVEAVRA 478
           ++   A M   S++ A   L  E    GR L  ++ F   +  +  +  +     +A +A
Sbjct: 426 QVRDTARMHNCSMWQACQLLINEGGFKGRALNAMQSFVLLITELEQSTLDEPLDQQADKA 485

Query: 479 LVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTL 538
           + +   Y   +Y+     K A+ R++N+ +L   + A      P++ E+     +     
Sbjct: 486 IRQSGLYA--MYQAERGEK-AQARLENLEEL---VTACKTFIVPEEAEE--MSPLAAFLA 537

Query: 539 RDMMERGE--ENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEE-NVEEER 595
              +E GE   + D DAVQ+MT+H +KGLEFP V+L G EEG+ P Q + DE   +EEER
Sbjct: 538 HASLEAGETQADKDQDAVQMMTIHTAKGLEFPLVFLAGVEEGMFPSQMTNDEPGRMEEER 597

Query: 596 RLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKK 647
           RL YVG+TRA ++L     + RR +G+    + SRF+ E+P D +E EV+ K
Sbjct: 598 RLCYVGMTRAMQKLYITYAESRRLYGQDKYHTASRFIREMPADCVE-EVRLK 648