Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 824 a.a., DNA helicase II from Agrobacterium fabrum C58

 Score =  400 bits (1027), Expect = e-115
 Identities = 254/663 (38%), Positives = 364/663 (54%), Gaps = 53/663 (7%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q EAV+ + GP LVLAGAG+GKTRV+T +IA+++         I AVTFTNKAARE
Sbjct: 56  LNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAARE 115

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           MKER+   +G        + TFH++G+ ++RR  + +GLK+ F++ D  D + L+K+L +
Sbjct: 116 MKERIGVLVGGAVEGMPWLGTFHSIGVKLLRRHAELIGLKSDFTILDTDDVVRLIKQLIQ 175

Query: 123 KQ-LDGDKDLLRLLLSTISNWKNDMLTPP-----QAKAMAKGEQQLLFAHCFELYQKQMQ 176
            + LD  +   +     I  WKN  LTPP      ++A A G+ + L+A     YQ +++
Sbjct: 176 AEGLDDKRWPAKQFAGMIDGWKNKGLTPPDIPEGDSRAFANGKGRELYA----AYQARLK 231

Query: 177 SYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLV----G 232
           + NA DF DL+L P+ + R + ++ + +  + RY+LVDEYQDTNT+QY  ++LL      
Sbjct: 232 TLNACDFGDLLLHPISIFRRHTDILKEYHQKFRYILVDEYQDTNTAQYMWLRLLAQRAKD 291

Query: 233 ERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIA 292
           E   +  VGDDDQSIY WRGA+  N++   +DFP  K+IKLE+NYRST  IL AA  LIA
Sbjct: 292 EPQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFPGAKVIKLERNYRSTEHILGAAGHLIA 351

Query: 293 NNPHVYQKALFSELAEGEKLKVILANNEDHEAE-RVIAEIIAHKFLNRTEYRDYAILYRG 351
           +N     K LF+E +  +  KV++    D E E R + E I        +  D AIL R 
Sbjct: 352 HNEGRLGKTLFTERSSPDDEKVVVHAAWDSEEEARAVGEEIEQLQRKNYKLNDMAILVRA 411

Query: 352 NHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKR 411
           + Q R  E       + Y++ GG  F+ R EI+D MAY R++  P DD AF RIVNTPKR
Sbjct: 412 SFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKR 471

Query: 412 EIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGN 471
            +G  T+  L  YA  R   +  A+ ++                       I  +  +  
Sbjct: 472 GLGDTTIRNLHDYARARDIPMLAAAADI-----------------------IETDELKPK 508

Query: 472 TVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKE 531
             +A+  +V+D R    L E +     AE  +        W  AD   + P + E  LKE
Sbjct: 509 ARKALFDVVQDFRRWQGLLENTEHTTLAEQILDESGYTAMW-QADKTAEAPGRLE-NLKE 566

Query: 532 VVQRL----TLRDMMER------GEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP 581
           +++ +    ++R  +E        E+N + DAV +MTLH++KGLEF  V+L G EEG+ P
Sbjct: 567 LIRSMESFESMRGFLEHVALVMDAEQNAELDAVSIMTLHSAKGLEFDTVFLPGWEEGLFP 626

Query: 582 HQTSIDE---ENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQD 638
           HQ ++DE     +EEERRL YVGITRA++         RR  G       SRFLDELP  
Sbjct: 627 HQRALDEGGRSGLEEERRLAYVGITRAKKLCHIWFVSNRRIHGLWQSTLPSRFLDELPPA 686

Query: 639 DIE 641
            ++
Sbjct: 687 HVD 689