Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., ATP-dependent DNA helicase PcrA from Acinetobacter radioresistens SK82

 Score =  255 bits (651), Expect = 5e-72
 Identities = 206/661 (31%), Positives = 342/661 (51%), Gaps = 56/661 (8%)

Query: 2   KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
           +LN +Q +A    +  CLVLAGAG GKT+ I  + AYL+ Q G  A  I  +TFT +AA 
Sbjct: 9   ELNLKQKQAATTTAQNCLVLAGAGCGKTKTIVARAAYLIDQ-GIPADQIQILTFTRRAAS 67

Query: 62  EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
           E+  RV Q LG  ++RGL  STFHT  + ++RR  +A GL   FS+ D  DQ+ + + L 
Sbjct: 68  EIVTRVEQHLG-AKARGLRASTFHTFCMYLLRRNSQAFGL-GQFSIIDRDDQILMFRLLR 125

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKG---EQQLLFAHCFELYQKQMQSY 178
            K  +        L    S  +N      +A A       E +   A   + Y+++ +  
Sbjct: 126 GKDKESVLPKAAQLCDIYSYARNTRNKLSEAIAQQWPDALEHKAQIAELMQAYERRKRER 185

Query: 179 NALDFDDLILLPVLLLRSNEEVRQRWQNRI-RYLLVDEYQDTNTSQYELVKLLVGERGRL 237
           N LD+DD++ +  + L+ +E +   W  R+   LLVDE QDTN  Q+ L++ LVG+  +L
Sbjct: 186 NFLDYDDILAIVAVHLQHSEAL-VNWVTRLCSVLLVDEMQDTNPLQWALLQPLVGKI-KL 243

Query: 238 TVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHV 297
             VGDD QSIY +RGA  +N+    E  P  +++ L+ NYRST  IL  +N L+  +P  
Sbjct: 244 FCVGDDAQSIYGFRGADFENIHHFKERVPDAEVLNLDFNYRSTQEILDLSNWLLDKSPLH 303

Query: 298 YQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRL 357
           Y K L +    G K ++ L +NE  EA  +  ++I  ++    ++ ++ IL R +  +R 
Sbjct: 304 YDKHLIAARGRGIKPQLHLFSNEFEEANWIAQDLIKRQYTG-AQWYEHMILVRSSFTARH 362

Query: 358 IEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPAT 417
           +E +L    +PYK  GG      A +KD+++ LRV+ NP DD A++R + T    +G   
Sbjct: 363 LEGALINANIPYKFVGGVKLLESAHVKDMLSMLRVVANPQDDIAWMRFL-TLWNGVGDVG 421

Query: 418 LEKLG------SYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGN 471
             KL       S  +MR + L      + L+  L  + L+ L+   E  +++A       
Sbjct: 422 ASKLAHELIQLSDIDMRCERL-EQHGRVALKAILMMKQLDVLQHEVEVCISLA------- 473

Query: 472 TVEAVRALVRD-IRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLK 530
            VEA+   + D  + ++W    S   K  ++ +K ++  ++ +   LE           +
Sbjct: 474 -VEALSEQLEDNYKNKEW----SRRLKDFDL-VKQLARKHNSLAGFLE-----------E 516

Query: 531 EVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPH-QTSIDEE 589
            V++ +++ ++    E + D D V L+T+H++KG E    Y+        PH +   D +
Sbjct: 517 YVLEPISVSEV----ERSTDQDLVTLITIHSAKGAEQKVCYVPHVSPSQYPHARAQGDFD 572

Query: 590 NVEEERRLMYVGITRAQRELTFIVCKE------RRQFGELIKPSQSRFLDELPQDDIEWE 643
            VEEERR++YV +TRAQ EL  I+ K+      + ++ E  +  +S FL++LP+  ++ +
Sbjct: 573 QVEEERRVLYVALTRAQDEL--ILTKQEFSSWAQDKYDEQGRIIESYFLNDLPESLVDVQ 630

Query: 644 V 644
           +
Sbjct: 631 I 631