Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

 Score =  100 bits (249), Expect = 7e-26
 Identities = 78/312 (25%), Positives = 143/312 (45%), Gaps = 20/312 (6%)

Query: 58  IEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLP 117
           +EA+G +E    V + +  A  ++++ F  G  V +   L  LD  V  A +   EA L 
Sbjct: 73  VEALGTVESMVTVPVRSRVAAAVEKVGFADGATVKEGDLLYQLDPRVIDAQILQAEATLN 132

Query: 118 AAKAKYE-------RYKGLFAKGSISKESYDEA-------EASYYALSADIESLKATIAR 163
             K + E       RY GL  + ++S+   D+A       +A      A++ +L+     
Sbjct: 133 RDKVQLEKNLRDVERYAGLATRNAVSQVQVDDARTTADVQKAVVAQDEANLTALRVQRGY 192

Query: 164 REIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDIS--RISLDQEVD 221
            EI++P  G IG+ +V  G  ++    +  +   + + + F +P+R I+  R + D +V 
Sbjct: 193 YEIRSPATGRIGVSSVRPGTVIRVDDTLATVRQLAPIYVAFGLPERYIAGLRAAKDAKVS 252

Query: 222 IFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQ 281
             +    +T   G+++ I+  +  Q+G +  +A  PN+D +L  G      + L   +N 
Sbjct: 253 FTIQGTGETISGGTVAVIDNTIEPQTGTLTARAIFPNADERLWPGALGAVTVTLRIEDNV 312

Query: 282 VTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTG 341
           V +P  A+     G  V+IV +     R     V V    +  + I +G+  G+ VVT G
Sbjct: 313 VAVPSEAVQNGQDGPFVFIVDDGIAHVR----PVTVTRTVDGRSVIAKGLDGGETVVTDG 368

Query: 342 QVRLSNGAKVRI 353
           Q+ L  G++V +
Sbjct: 369 QLSLREGSRVSV 380