Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  206 bits (524), Expect = 8e-58
 Identities = 121/357 (33%), Positives = 194/357 (54%), Gaps = 5/357 (1%)

Query: 1   MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEA 60
           MKK    ML    L+FG++ GF LFK   I + LA+  +P   V    A    W   ++A
Sbjct: 1   MKKRMIIMLAAVALVFGALYGFQLFKASMIKQALASLRDPPQTVATTVATLTPWQSTVKA 60

Query: 61  IGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAK 120
           +G +    G  L  E++G + +I F+SG +V + Q L+ L    E ANL + +A    + 
Sbjct: 61  VGSVRAEAGADLALESSGTVAKINFKSGDEVREGQVLLQLRDEQEVANLAALKATADVSA 120

Query: 121 AKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVF 180
               R +      ++S+ + D   A+     A +   +A + ++ +KAPF+G +GIR+V 
Sbjct: 121 IILNRDQEQLKIHAVSQATIDSDTANLKKALAQVAEQQAVVEKKTLKAPFSGRLGIRSVD 180

Query: 181 LGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIE 240
           LGQY+  GT +V L+  + + + F +PQ+ ++ +   Q V   VD YP  +F+G+++AI 
Sbjct: 181 LGQYVSAGTTVVTLQSLNPIFIDFYLPQQALAEVKAGQTVKATVDTYPGQAFEGTVTAIS 240

Query: 241 PAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYI 300
           P V V S  +Q++A+  N D +L  GMFA   + +   +  VT+PQTAI    YGD V++
Sbjct: 241 PKVDVTSRNVQLRAEFRNDDHRLTPGMFATVEVAVGTPDAFVTVPQTAIMANPYGDIVFV 300

Query: 301 VSEENGEK---RVQQHVVKVG-ERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRI 353
           V ++ G       +Q  VK G  R + IA +L G+K GD VV  GQ++L NG+ V +
Sbjct: 301 VEKKEGSATGLAARQVFVKTGATRGDQIA-VLSGIKAGDQVVAAGQMKLHNGSLVSV 356