Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

 Score =  115 bits (289), Expect = 2e-30
 Identities = 101/357 (28%), Positives = 158/357 (44%), Gaps = 35/357 (9%)

Query: 38  PEPEFPVTVVTANPVDWVPVI-EAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQP 96
           P P  PV + TA   + VPV  E IG ++ +  +T+     G + ++ F+ G +V     
Sbjct: 37  PPPPIPV-IATAVKTEDVPVYGEGIGTVQASNTITVKVRVDGELTKVVFKEGQEVKAGDI 95

Query: 97  LVLLDS-------AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYA 149
           L  +D        A  +A     EA L  AKA Y+RYK L  K + S++  D   A    
Sbjct: 96  LAQIDQRPFAAALAQAKAARAKDEALLANAKADYDRYKVLVPKQAASQQQLDTQSALVAQ 155

Query: 150 LSADIESLKATIARREI-------KAPFAGVIGIRNVFLGQ--YLQPGTDIVRLEDTSVM 200
             A I   +A I   +I       +AP +G  G+R V  G   +   G  +V +     +
Sbjct: 156 YQAQISGDEAAIDNAQIQLDYTTIRAPISGRTGVRLVDEGNIVHANDGGGLVVITQLKPV 215

Query: 201 RLRFTVPQRDISRISLDQEVDIFVDAYPQTSFK---------GSISAIEPAVSVQSGLIQ 251
            + FT+PQ  +     D +  +        +F+         G+++ I+  +S  +G ++
Sbjct: 216 AVVFTLPQDRLD----DMQAALARGPVSALAFRRDGVTEVGEGTVALIDNQISSDTGTLR 271

Query: 252 VQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQ 311
           ++A  PN D KL  G F    ++L    N +T+P  AI     G  VY+V     +  V+
Sbjct: 272 IKAVFPNDDLKLWPGAFVNVKVLLDTHHNVITIPAQAIQRGPDGFYVYVVKP---DATVE 328

Query: 312 QHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPPAETPML 368
           +  V     S  IA I  G+  GD VV  GQ +L  GA+V  V     TPPA + M+
Sbjct: 329 KRAVTTSGISAGIASIATGLVAGDQVVIDGQYKLIPGARV-TVRPPPATPPARSVMV 384