Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

 Score =  103 bits (257), Expect = 8e-27
 Identities = 94/367 (25%), Positives = 157/367 (42%), Gaps = 25/367 (6%)

Query: 9   LLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQ 68
           L +A LL  + +      +Q +  +      P+  V     N       +     +E   
Sbjct: 20  LTLAALLVANGLHARTLHEQSVTAWTETAAIPQVRVFQPQQNAAG--DTLRLPAHLEAWS 77

Query: 69  GVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS-------AVERANLKSTEARLPAAKA 121
              +    +G +     + GTQV   Q L  +DS       A   A L   +A    A+ 
Sbjct: 78  KAPIHARVSGYLKDWKADIGTQVKAGQILAEIDSPDLDQQMAQTHARLIQEQANARLAQT 137

Query: 122 KYERYKGLFAKGSISKESYDE-------AEASYYALSADIESLKATIARREIKAPFAGVI 174
              R++ L A  S+S++  DE       A+A+  A +AD   L A  + + I+APFAG I
Sbjct: 138 TATRWQNLLASHSVSRQEADEKTSNAAAAKANAEAAAADYARLSALESYKTIRAPFAGTI 197

Query: 175 GIRNVFLGQYLQPGTD----IVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQT 230
             RN  +GQ ++  TD    +  + DT  +RL   VPQ   + I    E ++ V  +P  
Sbjct: 198 TARNTDIGQLIKADTDSDPELFNIADTHQLRLYVPVPQNYAAVIHPGLEAELTVPEHPGE 257

Query: 231 SFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAIT 290
            FK  +     A+  +SG +  Q    N +G+L  G +A A + +P   + V++P +A+ 
Sbjct: 258 HFKARLIGDSTAIDRRSGTLLAQFVADNPNGELLPGDYAEATLPIPADTHGVSIPASALI 317

Query: 291 YTLYGDNVYIVSEENGEKRVQQHV-VKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGA 349
           +   G  V ++   N       H+ + +GER      I +G+KP D VV      L  G 
Sbjct: 318 FRAQGTQVAVLDAHNHVHLQTIHIGLDLGER----LVIDQGLKPVDRVVDNPPDALREGD 373

Query: 350 KVRIVES 356
            V++ ++
Sbjct: 374 PVQLADA 380