Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., secretion protein HlyD from Pseudomonas simiae WCS417

 Score =  110 bits (274), Expect = 9e-29
 Identities = 86/348 (24%), Positives = 161/348 (46%), Gaps = 25/348 (7%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLD- 101
           PV V  A   ++    +A+G +     + + +   G + +I FE G  V     L  +D 
Sbjct: 67  PVRVAPAVLGEFPVYYKALGTVTALNTINVRSRVGGELVKIAFEEGQMVKAGDLLAEIDP 126

Query: 102 ----SAVERAN--LKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIE 155
               +A+ +A   L   +A+L  A+   +RY+ L+A+ SI+K++ D AEA        ++
Sbjct: 127 RSYQNALLQAQGTLMQNQAQLKNAQVDVQRYRDLYAQDSIAKQTLDTAEALVLQYQGTVK 186

Query: 156 S-------LKATIARREIKAPFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVMRLRFTV 206
           +        K  +   +I+AP +G +G+R V +G  +     T +  +  T  + + FT+
Sbjct: 187 TNQGAVDDAKLNLEFTKIRAPISGRVGLRQVDVGNLVAANDTTFLAVITQTQPISVAFTL 246

Query: 207 PQRDISRISLDQEVD--IFVDAYPQTSFK----GSISAIEPAVSVQSGLIQVQADIPNSD 260
           P+  +  +         + V+A+ +   K    G + +++  + V +G ++ +A   N D
Sbjct: 247 PENTLETVLTRYHAGNKLPVEAWDRGDVKQQAVGVLQSLDNQIDVTTGTLKFKARFDNKD 306

Query: 261 GKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGER 320
             L    F   +++   L N V  P  AI +   G  VY++   +G+K+V+   + VG+ 
Sbjct: 307 QALFPNQFVNVHLLADTLHNVVLAPSAAIQFGNTGTFVYVL---DGDKKVKVQPLVVGDT 363

Query: 321 SESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPPAETPML 368
                 I EG+K GD VV  G  RL +G+++ +V   +  P   T  L
Sbjct: 364 DGDNTVIKEGLKAGDRVVLEGTDRLKDGSEIEVVNDSSEVPTTPTEHL 411