Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA from Variovorax sp. SCN45

 Score =  122 bits (306), Expect = 2e-32
 Identities = 90/342 (26%), Positives = 157/342 (45%), Gaps = 25/342 (7%)

Query: 44  VTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLD-- 101
           V + TA   D    +EA+G + P   V +  + +GV+  + F+ G  V K   L  +D  
Sbjct: 93  VGIATAKKADIPVQLEALGTVTPLANVVVQPQVSGVLTAVLFQEGQMVKKGDVLATIDPQ 152

Query: 102 ---SAVERAN--LKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADI-- 154
              +A+ +A    +  EA+L AA+    RY+ L  + SI+++  D   A    L   +  
Sbjct: 153 PFQNALAQATGARQRDEAQLAAARVTLSRYQTLLGQDSIARQDVDTQAALVKQLEGTVAI 212

Query: 155 -----ESLKATIARREIKAPFAGVIGIRNVFLGQYLQPGTD--IVRLEDTSVMRLRFTVP 207
                 + K  +    I AP +G IG+R V  G Y+  G    I  +   + + + F +P
Sbjct: 213 DRANENTAKLNLTWSRITAPVSGRIGLRPVDAGNYISTGATNGIATITQITPIDVEFAIP 272

Query: 208 QRDISRIS--LDQEVDIFVDAYPQTSFK----GSISAIEPAVSVQSGLIQVQADIPNSDG 261
           Q  +  +   L Q   +   A+ +T  +    G+ + ++  V   +G ++ +A   N+D 
Sbjct: 273 QDRVPEVQDRLAQGAKLDATAFDRTRTRRLATGAFATLDNLVDTATGTVKAKARFSNADN 332

Query: 262 KLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERS 321
            L    F    ++L  +++ V +P TA+ +   GD VY++ +++    V Q  V  GE S
Sbjct: 333 TLFPNQFVNLRLLLRTVDSAVVVPVTALRHGPNGDYVYVLKDDS---TVAQRTVTRGEAS 389

Query: 322 ESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPPA 363
                I+ G+  G+ VVT G  RL +GA+V+        PPA
Sbjct: 390 VDNVAIMSGLTAGEQVVTEGGDRLKDGARVQTTVDRPAAPPA 431