Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  105 bits (262), Expect = 2e-27
 Identities = 94/359 (26%), Positives = 163/359 (45%), Gaps = 38/359 (10%)

Query: 38  PEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPL 97
           P PE  V VV A P D   V E  G +E ++   +    +G++ +  F  G+ V   Q L
Sbjct: 47  PAPE--VGVVVAAPGDVGLVTELPGRLEASRVAQVRARASGILLKREFREGSDVKAGQLL 104

Query: 98  VLLDSAVERANLKSTEARLPAA-------KAKYERYKGLFAKGSISKESYDEAEASYYAL 150
             +D A   A L++ +A L  A       KA  +RYK L    ++SK+ Y  A AS    
Sbjct: 105 FRIDPAPLAAALQNAQATLARAEANAVQAKALADRYKPLVEANAVSKQEYATAVASQKTA 164

Query: 151 SADIESLKATIARREIK-------APFAGVIGIRNVFLGQYLQPG--TDIVRLED----- 196
            AD+ S +A +   +I        +P +G IG   V  G  +  G  T++  ++      
Sbjct: 165 EADVASGRAAVQTAKINLGYADVTSPISGRIGRALVTEGALVGQGEATELAVVQQINPVY 224

Query: 197 -------TSVMRLRFTVPQRDISRISLDQ--EVDIFVDAYPQTSFKGSISAIEPAVSVQS 247
                  T V++LR  +      R   ++   V + ++   + + +G +   +  V   +
Sbjct: 225 VNFTQSATDVLKLRRALADGQYKRAGSEEAASVRVVLEDGSEYALEGKLLFSDLTVDSTT 284

Query: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGE 307
           G I ++A++PN  G+L  G++ R  +   +  N +TLPQ A+T T  GD V +V ++   
Sbjct: 285 GQIMLRAEVPNPKGELLPGLYVRVRLEQAQATNAITLPQQAVTRTQQGDTVTVVDKDG-- 342

Query: 308 KRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLS---NGAKVRIVESDATTPPA 363
            ++ +  VK+    ++   +L+G+K G+ V+  G  +L     G  V+ V      P A
Sbjct: 343 -KLSKRNVKISAAKDNQWVVLDGLKAGEQVMVDGFQKLQMMPPGTPVKAVPWTKPNPAA 400