Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  176 bits (447), Expect = 7e-49
 Identities = 117/379 (30%), Positives = 183/379 (48%), Gaps = 26/379 (6%)

Query: 13  ILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTL 72
           +LL  + +    F Q +       +P P+  V+ V    + W     A+G + P +G  L
Sbjct: 5   VLLLVAALALGKFLQIRALIAAVPKPGPQ-TVSTVEVQKLQWQSQFTAVGTLNPVRGADL 63

Query: 73  TTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYKGLFAK 132
           +TE AG++  + F+SG  V     LV L++  + A L S EA    A    +R +   A 
Sbjct: 64  STEVAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEAAAAQAATVLKRDQAQLAV 123

Query: 133 GSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQPGTDIV 192
            ++S+   D       A  A +E   A +A++ I+APFAG +GI  +  GQY+  G  +V
Sbjct: 124 QAVSQAQIDADVNDLKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYVNAGDKLV 183

Query: 193 RLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQV 252
            L+    + + FT+PQ+ ++ +++ Q V++ VD +P  SF G I+AI P V   +  +QV
Sbjct: 184 TLQTLDPIYVDFTLPQQQLAGLAVGQVVNLTVDTFPGQSFSGKINAISPKVDAATRNVQV 243

Query: 253 QADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKR--- 309
           +A I N    L  GMFA   I +   + ++TLP TA+TY  YG  VY+V +    K    
Sbjct: 244 EATISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAEPPKAGAP 303

Query: 310 ---------------------VQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNG 348
                                 QQ  V+ G        I++G++ G VVV++GQ +L NG
Sbjct: 304 GTPGTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSGQNKLKNG 363

Query: 349 AKVRIVES-DATTPPAETP 366
             V +  S   T  PA TP
Sbjct: 364 TPVTVDNSVKPTNDPAPTP 382