Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  103 bits (256), Expect = 1e-26
 Identities = 89/375 (23%), Positives = 162/375 (43%), Gaps = 24/375 (6%)

Query: 1   MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEA 60
           +KK      ++A+ + G  +   +    ++ E  A+   P   V   T N      V+  
Sbjct: 20  LKKIGIGAAVVALAVVGVGVASRISATNELRETAADASVPTVAVVKPTMNGEGNDLVLP- 78

Query: 61  IGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS-------AVERANLKSTE 113
            G ++      +   T G + +   + G +V   QPL +LD+       A  +A+ ++  
Sbjct: 79  -GNVQAYNSAAIYARTNGYVRRWLADIGDRVRAGQPLAVLDAPDLDQQVAAAQADYQTAL 137

Query: 114 ARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSA-------DIESLKATIARREI 166
           A    A+   +R+  + A+ ++S++  DE      A +A       +++ LKA      +
Sbjct: 138 ANQRLAETTSKRWSAMLAQDAVSRQEADEKAGDLAARTAVSNAALANVKRLKAQQGFTRL 197

Query: 167 KAPFAGVIGIRNVFLGQYLQPGT----DIVRLEDTSVMRLRFTVPQRDISRISLDQEVDI 222
            APF GV+  R+  +G  +  G      +  + D   MR+   VPQ   + +       +
Sbjct: 198 AAPFDGVVTSRSAQIGALVVSGNAAAQPLFTVSDIHRMRIYVRVPQGYSASVRPGMGATL 257

Query: 223 FVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLE-NQ 281
            +  YP  SF  ++++   AV  QSG + VQ    N DG L+ G FA+ +  +   + N 
Sbjct: 258 TLPEYPGRSFNATLTSSSGAVDAQSGAVLVQLQAENPDGALKPGAFAQVSFKVGAGQGNG 317

Query: 282 VTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTG 341
           +TLP +AI Y+  G +V +V  +N   R+    V +     +   I  G+ P D +V T 
Sbjct: 318 MTLPGSAILYSNNGPSVAVVGADN---RITMKPVAIARDEGATVQIASGLSPNDRIVDTP 374

Query: 342 QVRLSNGAKVRIVES 356
              +  G  V++  S
Sbjct: 375 PDAIRTGDTVKVQAS 389