Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  132 bits (332), Expect = 1e-35
 Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 7/318 (2%)

Query: 37  RPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQP 96
           +  P   V  V   P  +   +EA+G    N+ V L+      ID + F  G  V+K Q 
Sbjct: 24  KARPPALVEAVAIAPTRFTDNVEAVGTALANEQVILSAPVTERIDVLNFTDGGFVSKGQV 83

Query: 97  LVLLDSAVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIES 156
           +  +    E+A L + EA    A  + +R + L ++G  +  + ++  A   +  A+ + 
Sbjct: 84  IARMAVGQEKAELAAAEATALQADQQLKRIQALKSRGFATGATVEQQIALANSARANADL 143

Query: 157 LKATIARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISL 216
            +A I  R I+APF+G + +R V  G  +  GT I  + D S ++L FTVP+  +S I  
Sbjct: 144 ARAGIGDRTIRAPFSGWVSLRTVSPGAVITAGTAIATVSDISRIKLDFTVPETRLSMIRE 203

Query: 217 DQEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILP 276
              +     A+P   F G+I+ I+P +   +  ++V+A +PN D  L+ GM    + +  
Sbjct: 204 GMPIKALSAAWPDRPFNGTIATIDPVIDPATRAVRVRAIMPNPDKALKPGMLLTVS-VFS 262

Query: 277 KLENQVTLPQTAITYTLYGDNVYI-VSEENGEKRVQQHVVKVGERSESIAHILEGVKPGD 335
           +    + +P+ A+     GD  ++ V +    KR +   V+ G R   +  IL GVK G 
Sbjct: 263 RERQSLGVPELAVIGD--GDERFVFVLDGRTAKRTK---VETGIRQNGLVEILGGVKAGQ 317

Query: 336 VVVTTGQVRLSNGAKVRI 353
            +VT G V+L++GA VR+
Sbjct: 318 QIVTEGVVKLTDGAPVRL 335