Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score =  116 bits (290), Expect = 1e-30
 Identities = 90/341 (26%), Positives = 155/341 (45%), Gaps = 25/341 (7%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS 102
           PV VV     D+    +A+G +     V + +  AG + +I F+ G +V     L  +D 
Sbjct: 66  PVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDP 125

Query: 103 AVERANLKSTE-------ARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALS---- 151
              R  L+  E       A+L  A+    RYKGL+A+ SI+K++ D AEA          
Sbjct: 126 RPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVK 185

Query: 152 ---ADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVMRLRFTV 206
              A +   +  +   +I+AP +G +G+R + LG  +     T +V +  T  + + FT+
Sbjct: 186 TNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTL 245

Query: 207 PQRDISRI--SLDQEVDIFVDAYPQTSFK----GSISAIEPAVSVQSGLIQVQADIPNSD 260
           P+ ++S +         + V+A+ +   K    G + +I+  +   +G ++ +    N D
Sbjct: 246 PETELSTVLERYRSGASLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKD 305

Query: 261 GKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGER 320
             L    F    ++   L+  V  P  AI +   G   Y+V+E++    V    +KVG  
Sbjct: 306 LALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDGTFAYVVNEQS---TVNVRKLKVGAS 362

Query: 321 SESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTP 361
               + IL+G+K GD +V  G  RL  G KV +VE  +  P
Sbjct: 363 DGENSVILDGLKAGDRLVLEGTDRLREGTKVEVVEDSSQVP 403