Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  179 bits (454), Expect = 1e-49
 Identities = 113/320 (35%), Positives = 171/320 (53%), Gaps = 2/320 (0%)

Query: 40  PEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVL 99
           P   V + TA  V       A G +E    V +  E  G I +I FESG  VA  Q LV 
Sbjct: 37  PATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQ 96

Query: 100 LDSAVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKA 159
           L+ A E+A     +ARL  A    +R + L A  ++S+E  D A  +      +++ ++A
Sbjct: 97  LNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEA 156

Query: 160 TIARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQE 219
            IA++ I+APFAG +GIR V  GQYL  G  IV L D S + + F + ++    +   Q 
Sbjct: 157 LIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQV 216

Query: 220 VDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLE 279
           + + VDA     F+  + A++P VS  + L+QVQA +PN  G+L+ GM+A   +   +  
Sbjct: 217 LALTVDAVRGQDFQARVVAVDPVVST-ARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPS 275

Query: 280 NQVTLPQTAITYTLYGDNVYIVSEE-NGEKRVQQHVVKVGERSESIAHILEGVKPGDVVV 338
             + +P+TAITYT YG  V++ +++     RV +  V  GER +    I  G+ PGD VV
Sbjct: 276 TVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVV 335

Query: 339 TTGQVRLSNGAKVRIVESDA 358
            +GQ++LS+G  V  V  D+
Sbjct: 336 VSGQLKLSDGMPVEPVAQDS 355