Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  104 bits (259), Expect = 4e-27
 Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 18/298 (6%)

Query: 72  LTTETAGVIDQITFESGTQVAKDQPLVLLDSA-------VERANLKSTEARLPAAKAKYE 124
           L     G + +   E G +V  DQPL  LD           RA L + EA L   +A+ +
Sbjct: 61  LAFRIGGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERD 120

Query: 125 RYKGLFAKGSISKESYDEAEASYYALSADIESLKAT--IARRE-----IKAPFAGVIGIR 177
           RY+ L  +  +S   YD AE  Y A  A ++  KA   +A  +     ++AP AGVI  R
Sbjct: 121 RYQKLLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKR 180

Query: 178 NVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSIS 237
            V +GQ +  G  +  L       +   +P++  +R ++ Q V + + ++PQ  F+G I 
Sbjct: 181 QVEVGQVVAAGQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIR 240

Query: 238 AIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDN 297
            + PA   +S     +     +      G  AR  I    L   + +P +A+T     + 
Sbjct: 241 ELSPAADPRSRTFAARIAFTTAAVPAELGQSARVFIAKDGL-IPLAVPLSAVTAE---NG 296

Query: 298 VYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVE 355
              V   N E R+++  V++G        +LEG+ PGD VV  G   L  G +VR V+
Sbjct: 297 QAYVWRVNKESRLERATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVRPVD 354