Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score =  102 bits (255), Expect = 1e-26
 Identities = 86/335 (25%), Positives = 149/335 (44%), Gaps = 17/335 (5%)

Query: 44  VTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSA 103
           V VVT  P  +    E  G     +   +  +  G+I +  F+ G++V + Q L  +D A
Sbjct: 37  VGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIILKRLFKEGSEVKEGQQLYQIDPA 96

Query: 104 VERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIAR 163
           V  A L + +A L A ++  ERYK L  + ++SK+ YD+A A      A ++S +  +  
Sbjct: 97  VYEATLANAKANLLATRSLAERYKQLIDEQAVSKQEYDDANAKRLQAEASLKSAQIDLRY 156

Query: 164 REIKAPFAGVIGIRNVFLGQYLQPG-TD-IVRLEDTSVMRLRFTVPQRDISRISLDQE-- 219
            ++ AP +G IG  +   G  +  G TD +  ++    + +  T    ++ ++  D E  
Sbjct: 157 TKVLAPISGRIGRSSFTEGALVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESG 216

Query: 220 -----------VDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMF 268
                      V + ++       +G +   E AV   +G + ++A  PN D  L  GMF
Sbjct: 217 QLQKAGDNAASVQLVLEDGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMF 276

Query: 269 ARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHIL 328
             A +      N +  PQ  +T  L G    +V   N E +V+   +K      S   I 
Sbjct: 277 VHARLKAGVNANAILAPQQGVTRDLKGAPTALV--VNQENKVELRQLKASRTLGSDWLIE 334

Query: 329 EGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPPA 363
           EG+ PGD ++T G   +  G +V++ ++     PA
Sbjct: 335 EGLNPGDRLITEGLQYVRPGVEVKVSDATNVKKPA 369