Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., Multidrug resistance protein MdtA from Pseudomonas sp. DMC3

 Score =  230 bits (587), Expect = 4e-65
 Identities = 134/372 (36%), Positives = 207/372 (55%), Gaps = 21/372 (5%)

Query: 8   MLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPN 67
           ++L+ +L+ G    F+++    I  +  ++P+P   V V TA    W   +  +G ++  
Sbjct: 12  VVLLIVLVLGGYKAFSIYTM--IQGF--SKPKPPISVAVATAGEQPWQMRLPTVGTLKAL 67

Query: 68  QGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYK 127
           QGV L+ E AG + ++ FESG +V   QPL+ LDSAVE A L++  A L  A+  + R  
Sbjct: 68  QGVDLSLEVAGTVTELKFESGQKVKAGQPLLQLDSAVETALLETARADLGLAQLDFGRGA 127

Query: 128 GLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQP 187
            L    +ISK  YD   A      A +  L A++A++ I APF+G IGIR V +G YL  
Sbjct: 128 QLVDSRAISKGEYDRLSAVLQKNKATVNQLNASLAKKRILAPFSGTIGIRQVDVGDYLAS 187

Query: 188 GTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQS 247
           GT I  L+D S +   F VP++ + ++++ Q V   V AYP  +F G ISAI P V   +
Sbjct: 188 GTKIATLQDLSSLYADFYVPEQAVPKLAIGQPVQFTVAAYPGQNFVGKISAINPIVESTT 247

Query: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGE 307
             I V+A + N DGKL  GMFA   ++LP  +  + +P++AITYTLYG++VY+V ++  E
Sbjct: 248 RNILVRATLANPDGKLLPGMFASLEVLLPDPQKHIVVPESAITYTLYGNSVYVVGQKKAE 307

Query: 308 KR-------------VQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIV 354
                           ++  V+ GER + +  I +GV+ G+ VVT GQ++L NGA + I 
Sbjct: 308 DGSVAKDDNGQPLLIAERRFVETGERRDGLVMINKGVQSGEQVVTAGQIKLDNGAHIAIS 367

Query: 355 E----SDATTPP 362
           +     +  +PP
Sbjct: 368 DDKTLGEQNSPP 379