Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Multidrug resistance protein MdtA from Pseudomonas sp. DMC3

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 86/331 (25%), Positives = 151/331 (45%), Gaps = 24/331 (7%)

Query: 44  VTVVTANPVDWVPVIEAI----GFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVL 99
           VTV  A  V   P  +A+    G +       L     G + +   + G +V  DQPL  
Sbjct: 29  VTVRPAMVVQPEPSAQAMESYPGEVRARYEPDLAFRIGGKVSRRLVDEGQRVKADQPLAE 88

Query: 100 LDSAVERANLKSTEARLPAA-------KAKYERYKGLFAKGSISKESYDEAEASYYALSA 152
           LD    R  L++T A++ AA       +A+ +RYK L  +  +S+ +YD AE  Y +  A
Sbjct: 89  LDPQDVRLQLEATRAQVAAAEANLNLVRAERDRYKTLMDRQMVSRSAYDNAENLYRSGEA 148

Query: 153 DIESLKATI-------ARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFT 205
            ++ +KA         +   ++AP  GV+  R+V +GQ +  G  +  L       +  +
Sbjct: 149 RLKQIKAEFNVSTNQASYAVLRAPQDGVVAKRSVEVGQVVAAGQTVFTLATDGEREVLIS 208

Query: 206 VPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRS 265
           +P++   R  + Q V + + A     F G I  + P+   +S      A I  + GK+ +
Sbjct: 209 LPEQSFGRFKVGQPVTVELWAQQNQRFAGQIRELSPSADPRSRTF--AARISFTSGKVPA 266

Query: 266 GMFARANIILPKLEN-QVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESI 324
            +   A + +   ++  +++P +A+T       V++V   NG   +++  V+VG   E  
Sbjct: 267 ELGQSARVFVQAADSVSLSIPLSALTAENGATYVWVV---NGNNTLKKTPVRVGPFGEKS 323

Query: 325 AHILEGVKPGDVVVTTGQVRLSNGAKVRIVE 355
             +LEG+   D VV  G   L +G +VR V+
Sbjct: 324 VAVLEGLNASDWVVAAGVHVLLDGQQVRPVD 354