Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., Multidrug transporter MdtA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  108 bits (270), Expect = 3e-28
 Identities = 88/352 (25%), Positives = 158/352 (44%), Gaps = 25/352 (7%)

Query: 37  RPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQP 96
           R  P  PV   TA        +  +G +     VT+ +   G +  + F+ G QV     
Sbjct: 54  RDGPLAPVQAATATTQAVPRYLSGLGTVTAANTVTVRSRVDGQLIALHFQEGQQVNAGDL 113

Query: 97  LVLLDS-------AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYA 149
           L  +D        A  +  L    A L  A+    RY+ L     +S++  D  +A    
Sbjct: 114 LAQIDPSQFKVALAQAQGQLAKDNATLANARRDLARYQQLAKTNLVSRQELDAQQALVNE 173

Query: 150 LSADIESLKATIARREIK-------APFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVM 200
               I++ +A +A  +++       AP +G +G++ V +G  +       IV +  T  +
Sbjct: 174 TQGTIKADEANVASAQLQLDWSRITAPVSGRVGLKQVDVGNQISSSDTAGIVVITQTHPI 233

Query: 201 RLRFTVPQRDISRISLDQEVD--IFVDAYPQTSF----KGSISAIEPAVSVQSGLIQVQA 254
            L FT+P+ DI+ +   Q+    + V+A+ +T+     +G + +++  +   +G I+++A
Sbjct: 234 DLIFTLPESDIATVVQAQKAGKALVVEAWDRTNSHKLSEGVLLSLDNQIDPTTGTIKIKA 293

Query: 255 DIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHV 314
              N D  L    F  A +++   +N V +P  A+     G  V+++++EN    V +  
Sbjct: 294 RFTNQDDTLFPNQFVNARMLVDTEQNAVVVPAAAVQMGNEGHFVWVLNDENN---VSKKR 350

Query: 315 VKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPPAETP 366
           VK+G +      I  G+  GD VVT G  RL+ GAKV +VE   T    ++P
Sbjct: 351 VKIGIQDNRNVVISAGLSAGDRVVTDGIDRLTEGAKVEVVEPQTTVADEKSP 402