Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score =  119 bits (299), Expect = 1e-31
 Identities = 96/350 (27%), Positives = 160/350 (45%), Gaps = 25/350 (7%)

Query: 37  RPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQP 96
           R  P  PV   TA        +  +G I     VT+ +   G +  + F+ G QV     
Sbjct: 55  RSGPLAPVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDL 114

Query: 97  LVLLDS-------AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYD-------E 142
           L  +D        A  +  L   +A L  A+    RY+ L     +S++  D       E
Sbjct: 115 LAEIDPSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE 174

Query: 143 AEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVM 200
            E +  A  A + S +  +    I AP  G +G++ V +G  +  G  T IV +  T  +
Sbjct: 175 TEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPI 234

Query: 201 RLRFTVPQRDISRISLDQEVD--IFVDAYPQTSFK----GSISAIEPAVSVQSGLIQVQA 254
            L FT+P+ DI+ +   Q+    + V+A+ +T+ K    G++ +++  +   +G I+V+A
Sbjct: 235 DLVFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKA 294

Query: 255 DIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHV 314
              N D  L    F  A +++   +N V +P  A+     G  V++++ EN   +V +H+
Sbjct: 295 RFNNQDDALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVLNSEN---KVSKHL 351

Query: 315 VKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPPAE 364
           V  G +      I  G+  GD VVT G  RL+ GAKV +VE+ + T P E
Sbjct: 352 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVEAQSATTPEE 401