Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  120 bits (302), Expect = 4e-32
 Identities = 88/315 (27%), Positives = 152/315 (48%), Gaps = 26/315 (8%)

Query: 62  GFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKA 121
           G + P   + +  + +G I++I  E G +VAK Q L  +D +  +A  +  +A L +AKA
Sbjct: 55  GTVVPLNEIEIRPQVSGYINKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQAQATLKSAKA 114

Query: 122 KYER-------YKGLFAKGSISKESYDEAEASYYALSADIESLKATIARR-------EIK 167
             ER       Y+ L  + +I+K+  D A+A      + + S +A +           I 
Sbjct: 115 NLERVKKDLARYEALDKQEAIAKQQLDYAKADILTAESQVSSAEAQVRSTLTDYNYSVIT 174

Query: 168 APFAGVIGIRNVFLGQYLQPGTDIVR-LEDTSVMRLRFTVPQRDISRISLDQEVDIFVDA 226
           APF+G +GI  V LG  +  G  ++  L     + + F V +RD+ R S   + +   D+
Sbjct: 175 APFSGTVGISQVRLGAQVSAGQSLLNTLSSNDPVLVDFVVNERDVRRFSKMMKNESLPDS 234

Query: 227 YPQTSF--------KGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKL 278
                F         G ++ I+ AV  QSG I ++ + PN D +L  GM     ++   +
Sbjct: 235 TFTIQFGENDVYRHHGELTTIDRAVGRQSGTINMRVEFPNPDRELIPGMTLNLRVLNQDI 294

Query: 279 ENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVV 338
            +Q+ +P  A+T  +    VY+V +++    V Q  V++G +  +   + EG+KPG  +V
Sbjct: 295 GDQIAIPFKAVTEQMGEYFVYVVGDDS---VVHQQNVQLGTKVGAEIVVREGLKPGQKIV 351

Query: 339 TTGQVRLSNGAKVRI 353
             G  +L  GAKV+I
Sbjct: 352 VEGIQKLREGAKVQI 366