Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., multidrug efflux system, subunit A from Escherichia coli BL21

 Score =  120 bits (301), Expect = 7e-32
 Identities = 96/350 (27%), Positives = 160/350 (45%), Gaps = 25/350 (7%)

Query: 37  RPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQP 96
           R  P  PV   TA        +  +G I     VT+ +   G +  + F+ G QV     
Sbjct: 55  RSGPLAPVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLMALHFQEGQQVKAGDL 114

Query: 97  LVLLDS-------AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYD-------E 142
           L  +D        A  +  L   +A L  A+    RY+ L     +S++  D       E
Sbjct: 115 LAEIDPSQFKVALAQAQGQLAKDKATLANARRDLARYQQLVKTNLVSRQELDAQQALVSE 174

Query: 143 AEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVM 200
            E +  A  A + S +  +    I AP  G +G++ V +G  +  G  T IV +  T  +
Sbjct: 175 TEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPI 234

Query: 201 RLRFTVPQRDISRISLDQEVD--IFVDAYPQTSFK----GSISAIEPAVSVQSGLIQVQA 254
            L FT+P+ DI+ +   Q+    + V+A+ +T+ K    G++ +++  +   +G I+V+A
Sbjct: 235 DLLFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKA 294

Query: 255 DIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHV 314
              N D  L    F  A +++   +N V +P  A+     G  V++++ EN   +V +H+
Sbjct: 295 RFNNQDDALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVLNSEN---KVSKHL 351

Query: 315 VKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPPAE 364
           V  G +      I  G+  GD VVT G  RL+ GAKV +VE+ + T P E
Sbjct: 352 VTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVEAQSATTPEE 401