Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., Multidrug resistance protein MdtA from Azospirillum sp. SherDot2

 Score =  184 bits (467), Expect = 3e-51
 Identities = 106/315 (33%), Positives = 174/315 (55%), Gaps = 4/315 (1%)

Query: 40  PEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVL 99
           P  PV             + A+G +  N+ V +  E AG I +I F+ G +VAK   LV 
Sbjct: 67  PPMPVEAAQVRVGTVERTVTAVGSLLSNESVVVRPEIAGRISEIAFKEGQRVAKGTVLVR 126

Query: 100 LDSAVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKA 159
           LD A+ RA L   +A +  ++A+  R   L  + +    + ++A A   A  A ++  +A
Sbjct: 127 LDDAIARATLAQAQASIAFSRAELSRADQLVRQNTGPLRNREQASAKLLADEAAVQLARA 186

Query: 160 TIARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQE 219
            + ++ I APF GV+G+R   +G ++Q G DIV LED   ++L F VP+  +  + + Q 
Sbjct: 187 QLDKQVIAAPFDGVLGLRKASVGDFVQAGKDIVNLEDIDTLKLDFRVPEMFLPAVKVGQT 246

Query: 220 VDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLE 279
           V + VDA+   SF G++ AI+P V V    + ++A +PN DG LR G+FAR ++ L  + 
Sbjct: 247 VRVAVDAFGGRSFDGTVYAIDPLVDVNGRALAIRARVPNPDGSLRPGLFARVSLTLTTVP 306

Query: 280 NQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVT 339
           + V +P+ AI    +G + ++    +G K VQ  VV +GER  +   I +G+ PGD+VVT
Sbjct: 307 DAVLIPEQAI--VAFGKDQFVFKVVDG-KVVQTRVV-LGERRNAEVEIAKGLAPGDMVVT 362

Query: 340 TGQVRLSNGAKVRIV 354
            GQ+++ +G  V ++
Sbjct: 363 AGQLKIRDGVPVTVL 377