Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Multidrug transporter MdtA from Alteromonas macleodii MIT1002

 Score =  109 bits (272), Expect = 1e-28
 Identities = 75/316 (23%), Positives = 135/316 (42%), Gaps = 6/316 (1%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS 102
           PV   T    D     +    +E  +   +    +G+I++I  E G  V K Q L  LD 
Sbjct: 66  PVETQTIVTGDITSTYDTTAILEAREEAFVVARASGIIEKIFVEEGDYVEKGQVLAQLDK 125

Query: 103 AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIA 162
                NL    A L   +++ E+   +++K  IS ++YD+  + + +  A +   +  + 
Sbjct: 126 RRYELNLSKALADLAGIESELEKVNKVYSKKLISDDTYDKLTSQFESAKASVRLAELDLK 185

Query: 163 RREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTV--PQRDISRISLDQEV 220
              I AP  G I  RN  +G   +               L+  V  P+ ++  + + Q  
Sbjct: 186 EATITAPIDGYIAERNAKVGNLTESFQRERMFHIVQQRNLQGIVYLPENELPNVVIGQGA 245

Query: 221 DIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLEN 280
            + V A    S   S+  I P +   +G  +V   +PN D KL++GMF   ++      N
Sbjct: 246 MLTVAALGDRSITASVERISPVIDATTGTFKVTLKVPNEDNKLKAGMFTDVSLEYATHAN 305

Query: 281 QVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTT 340
              LP+ A+       +V++V  +NG  +V++  +  G  +  +  ++ G+   + VVT 
Sbjct: 306 ATLLPRRALVTIDNNHSVFVV--DNG--KVKKVDISTGFENNEVVEVINGLNGNEEVVTA 361

Query: 341 GQVRLSNGAKVRIVES 356
           G   L + A V +V S
Sbjct: 362 GHQNLKDSAPVEVVNS 377