Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., Multidrug transporter MdtA from Alteromonas macleodii MIT1002

 Score =  156 bits (395), Expect = 7e-43
 Identities = 96/347 (27%), Positives = 177/347 (51%), Gaps = 9/347 (2%)

Query: 8   MLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPN 67
           +LL  +LL G V+  N+ +++  +  +      +  +    A P+     IE++G    N
Sbjct: 10  LLLGVVLLAGVVVYLNMPEEESASNSIVRATPVKTALVSSQAFPI----TIESLGTATAN 65

Query: 68  QGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYK 127
           + V +T +    +  I FE G +  + + LV L++  ERA ++  +A +  AK ++ R  
Sbjct: 66  ESVNITAQVTDTVKTINFEDGDKATEGELLVQLNNTEERARVEELKANIDEAKRQFTRIS 125

Query: 128 GLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQP 187
            L    + S++  DE +A   AL A ++   A +   +I+APF+G++G R + +G  +QP
Sbjct: 126 DLRQSNATSEQLLDEQQARVKALQAQLDVALAQLNDLQIRAPFSGLLGNREISIGSLVQP 185

Query: 188 GTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQS 247
           G  I  L+D S++++ F++ +  ++ ++  Q +     AYP   F G IS I+  +   S
Sbjct: 186 GDTITTLDDISLIKVDFSIAESHLASVAKGQALSASSVAYPGEEFTGKISNIDTRLDPIS 245

Query: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGE 307
             I+V+A I N D +LR GM     I+  ++ N + LP+ A+        VY+V     +
Sbjct: 246 RSIRVRATIDNQDNRLRPGMLLTV-IVEKRVLNTLVLPEKALVPVQDKQYVYVVK----D 300

Query: 308 KRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIV 354
               Q  V +GER   +  I+ G+  GD V+T G +R+ + + V ++
Sbjct: 301 NVAHQTEVVIGERRPGLVQIVSGLNEGDEVITEGTLRVRDQSPVNVL 347