Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1045 a.a., efflux RND transporter permease subunit from Rhizobium sp. OAE497

 Score =  520 bits (1339), Expect = e-151
 Identities = 325/1032 (31%), Positives = 551/1032 (53%), Gaps = 28/1032 (2%)

Query: 7    FIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGFITQP 66
            FI RPV A  I+ +I+L G+ +I  + + +YP++  T + +S  Y GA A+ ++  +T+ 
Sbjct: 5    FIARPVFAWVIAIVIMLAGILSITTLSISQYPQIAPTTVRISGTYPGADAETVENSVTKV 64

Query: 67   LEQAVAQADNIDFMTSQSV-LGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPKEAED 125
            +EQ +   DN+D+MTS S   G+++I++T     +P+ A   V  K   V +QLP+  ++
Sbjct: 65   IEQGMTGIDNLDYMTSTSQSTGQASISLTFTSAANPDVAQMQVQNKLQLVEAQLPQSVQN 124

Query: 126  PTVTMSTGSTTAVLYIGFTS--NELASSQITDYLERVVNPQLYAVNGVSSIDLYGGMKYA 183
              +T++  ++  ++ IGF S   +L S+ + DY+   +N  L  V GV    L+G   YA
Sbjct: 125  TGLTVTKSTSNFLMVIGFVSMDGKLTSTDLADYVNSSLNDTLKRVPGVGDTQLFGS-GYA 183

Query: 184  LRVWLDPAKMAALNLSAADVMSILNANNYQSATGQA------IGEFVLYNGSADTQVSTV 237
            +R+W+DP K+A  +L  +DV + + A N Q A GQ        G+ +    +A +++ T 
Sbjct: 184  MRIWVDPDKLAKYSLMVSDVTNAIEAQNTQVAAGQLGALPQRKGQQLNATVTAKSRLQTP 243

Query: 238  EDLESLVVK-AEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIA 296
            E  +++++K A  G++ RL D+A V L     +  ++ NG  A   AIN A  AN I+ A
Sbjct: 244  EQFQNIILKSASSGSLVRLNDVATVELGAESYSSFSTYNGNPAAGLAINLASGANAIDTA 303

Query: 297  KDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLR 356
            + V   +  L+  +P N+E+   YD+T  +  SI +V+KT+VEA ++V +V+ +FL S R
Sbjct: 304  EAVQSTVETLRGTLPPNVEVVYPYDTTPFVKLSIEDVVKTLVEAIVLVFIVMFVFLQSFR 363

Query: 357  AVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHI-KE 415
            A LIP + +P+ L+G   V+   G+S N +T+  MVLAIGL+VDDAIVV+ENV+R + +E
Sbjct: 364  ATLIPTLAVPVVLLGTFGVLAFFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMEEE 423

Query: 416  GESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGI 475
            G SP  A I    EI   +I +   L AV+ P+A   G  G ++++F++T+  ++ +S +
Sbjct: 424  GLSPREATIKSMEEITGALIGIATVLSAVFIPMAFFSGSVGVIYRQFSVTIVSAMLLSVV 483

Query: 476  VALTLSPMMCSKMLKANEAPNKFELK---VHHLLDRMTARYERMLTAVMAHRPVVIAFAF 532
            VAL L+P +C+ +LK  +   K        +   DR T  Y+R ++ ++    + IA   
Sbjct: 484  VALILTPALCATILKKPKHGAKSRGVFGFFNRNFDRGTRGYQRSVSGIIRRSGIFIAMFL 543

Query: 533  IVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDV-NKILSDQPEV- 590
            ++  +   LF  +PS   P ED+G+++     P  A  D     +  V +  L+D+ +  
Sbjct: 544  LIAVATGYLFTRLPSSFLPDEDQGILITSVQLPVGATADRTQKVLKQVTDHYLNDEKDYV 603

Query: 591  --QFAQVFTGVPNSNQAFGIA--SMVPWSQREASQA---TVTNRVGTLVQDIPGMAVTAF 643
                A V  G     Q  G+A   +  + QR   QA    +  R       I    V A 
Sbjct: 604  TGVMAVVGFGFGGQGQNVGLAFVKLKDFDQRTTPQAKAQAIAQRAMGAFSKIKDANVFAL 663

Query: 644  QMPELPGAGSGLPIQFVI--TTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATM 701
              P +PG G+     F +     +  + L  +   +L     +   V +  +   DS   
Sbjct: 664  SPPAIPGFGNNAGFDFYLKDMNGAGHQQLIQVRNQLLAAAGKSNKLVGTRPNGQEDSPQY 723

Query: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761
             ++ID++KA A  + + DI  TLST     YVN     GR  +V  Q ++ +R+ PE  +
Sbjct: 724  SVDIDQEKASALNLNLSDIDTTLSTAWGGNYVNDFIDRGRVKKVYVQADKAFRMQPEDFD 783

Query: 762  SYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENL 821
             +YV+ +DG+++P  +            L  +N  ++  +    APG + GDA+N  + +
Sbjct: 784  RWYVKNSDGEMVPFSAFADGHWKFGSPRLERYNGSSAVEIQGAAAPGVSSGDAMNEIDAI 843

Query: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVP 881
               +LP G++H++ G + Q    G+     + +++ ++FL LA  +ES   P  +M+SVP
Sbjct: 844  V-GQLPGGFTHEWTGLSAQERLSGNQAAQLYAISILVVFLALAALYESWAIPFAVMLSVP 902

Query: 882  LAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMH 941
            + + GAL A        ++Y +VGL+T +GL  K+ ILI E A ++Q   K   + A + 
Sbjct: 903  IGVFGALAAALLFGQNNDVYFKVGLLTTIGLAAKNAILIVEFAIDQQKSGK-DLVTATVE 961

Query: 942  AAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIY 1001
            AA+ RLRPILMT+ A I G++PL  A+GAG+  + SIGI ++ G+   T+  +F +P+++
Sbjct: 962  AARQRLRPILMTSLAFILGVLPLAVASGAGSGSQNSIGIGVMGGMISATVIGVFFIPLLF 1021

Query: 1002 SYLAEKHKPLPV 1013
              +    K  PV
Sbjct: 1022 VTVRRVFKARPV 1033