Pairwise Alignments
Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440
Score = 528 bits (1359), Expect = e-153
Identities = 338/1042 (32%), Positives = 552/1042 (52%), Gaps = 49/1042 (4%)
Query: 1 MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
M F+ FI RP+ A +S ++++ G ++F++ + EYPE+ + V + GA+ +I
Sbjct: 1 MNFSKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG 60
Query: 61 GFITQPLEQAVAQADNIDFMTSQSVL-GRSTITVTMKLNTDPNAALSDVLAKTNSVRSQL 119
+ PLEQA+ +N+ +M+SQS G+ T+T+T L TD + A V + + +L
Sbjct: 61 ETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKL 120
Query: 120 PKEAEDPTVTMSTGSTTAVLYIGFTS--NELASSQITDYLERVVNPQLYAVNGVSSIDLY 177
P+E +T+ S + + TS N +++Y + +L + GV + L+
Sbjct: 121 PEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLF 180
Query: 178 GGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQ-----AIGEFVLYNGSADT 232
G Y+LRVWLDP K A+ NL+A+DV++ + N Q A GQ A G + S +T
Sbjct: 181 GMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGS-TSFQLSINT 239
Query: 233 QVSTV--EDLESLVVKA-EKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPS 289
Q V E+ E+++++A G +TRL DIA+V L S R+ N + AV I P
Sbjct: 240 QGRLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPG 299
Query: 290 ANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVIT 349
+N I I+ +V + EL+K+ P ++ +++YD T+ + SI V+ T+ EA ++V++V+
Sbjct: 300 SNAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVI 359
Query: 350 LFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV 409
LFL + RA +IP++ +P+SLIG VM + GFS N ++L +VLAIG+VVDDAIVV+ENV
Sbjct: 360 LFLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENV 419
Query: 410 DRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGS 469
+R+I G P A E+ P+IA L L AV+ P A + G+TG +K+FALT+A S
Sbjct: 420 ERNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAIS 479
Query: 470 VFVSGIVALTLSPMMCSKMLKANEAP-NKFELKVHHLL------------DRMTARYERM 516
+S +LTLSP + + +LK + AP ++F + LL DR + Y
Sbjct: 480 TVISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVGG 539
Query: 517 LTAVMAHRPVVIAFAFIVFASLPML----FKFIPSELAPSEDKGVIMLMGTGPSNANLDY 572
+ V+ + A V+A L L F P+ P++DK ++ P A+LD
Sbjct: 540 VRRVIRSSGI----ALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDR 595
Query: 573 LANTMDDVNKILSDQPEVQFAQVFTGV--------PNSNQAFGIASMVPWSQRE---ASQ 621
+ +++I QP V + F G+ PNS F + P+ +R+ S
Sbjct: 596 TEAVIKRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVF--TPLKPFDERKDPSQSA 653
Query: 622 ATVTNRVGTLVQDIPGMAVTAFQMPELPGAGS--GLPIQFVITTPSNFESLFTIATDVLT 679
A + + DI + F P + G G+ G +Q +E+L+ +++
Sbjct: 654 AAIAAALNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIA 713
Query: 680 EVKANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLN 739
+ P + + ID++KA +GV + DI TL + Y N +
Sbjct: 714 KSHNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRF 773
Query: 740 GRSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSA 799
GR+Y+V Q E+++RL+ E + VR G++IPL + + + + P + H+N +A
Sbjct: 774 GRTYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITA 833
Query: 800 TVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAII 859
+ APG + G A E L +LP G + ++ Q + G+ F L + +
Sbjct: 834 EINGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLA 893
Query: 860 FLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGIL 919
FLVLA Q+ES PL +++ VP+ + A+ + NI++Q+GLI LVGL K+ IL
Sbjct: 894 FLVLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAIL 953
Query: 920 ICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIG 979
I E AK+EQ L + AV+ A ++RLRPILMT+ A I G++PL++++GAG+ R ++G
Sbjct: 954 IVEFAKDEQAKG-LDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMG 1012
Query: 980 IVIVSGLAIGTLFTLFVLPVIY 1001
+ + SG+ T+F LF+ PV +
Sbjct: 1013 VAVFSGMIGVTVFGLFLTPVFF 1034
Score = 59.7 bits (143), Expect = 1e-12
Identities = 84/451 (18%), Positives = 180/451 (39%), Gaps = 29/451 (6%)
Query: 582 KILSDQPEVQFAQVFTGVPN----SNQAFGIASMVPW------SQREASQATVTNRVGTL 631
K++ + Q TGV N S+Q+ + + + +Q V NRV
Sbjct: 57 KVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRT 116
Query: 632 VQDIPGMAVTAFQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFV--Y 689
+P VT + + A L + +T+P N + ++ + +K +
Sbjct: 117 QPKLPE-EVTRIGIT-VDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGV 174
Query: 690 SDLDL-NFDSATMKINIDKDKAGAYGVTMQDIGITL---STMMADGYVNRIDLNGRSYEV 745
D+ L ++++ +D +K + +T D+ + + +A G + G +
Sbjct: 175 GDVQLFGMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQ 234
Query: 746 IPQVERKWRLNPESMNSYYVRA-ADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAV 804
+ + +N E + +RA ADG++ L + +++ + +L LN+ A+
Sbjct: 235 LSINTQGRLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSL--LNNQPAVAI 292
Query: 805 PA---PGT---AMGDAINWFENLASSKLPKGYSHDYMGEARQYVTEG-SALYATFGLALA 857
P PG+ + D + P+G + + + +V A+ T AL
Sbjct: 293 PIFQRPGSNAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALV 352
Query: 858 IIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHG 917
++ LV+ + ++ R ++ +++VP+++ G + ++N S GL+ +G++
Sbjct: 353 LVVLVVILFLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDA 412
Query: 918 ILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFS 977
I++ E E + L +EA A PI+ T + A +P + +G
Sbjct: 413 IVVVENV-ERNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQ 471
Query: 978 IGIVIVSGLAIGTLFTLFVLPVIYSYLAEKH 1008
+ I I +L + P + + L + H
Sbjct: 472 FALTIAISTVISAFNSLTLSPALAAVLLKDH 502