Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

 Score =  924 bits (2387), Expect = 0.0
 Identities = 473/1009 (46%), Positives = 690/1009 (68%), Gaps = 1/1009 (0%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            MRFTDVF++RPVLA+ +S LI+L+GL A+ K+ +R+YP + ++ IT+ST Y GASA+L+Q
Sbjct: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
            GF+TQP+ QAV+  + ID+++S S  GRS IT+ M LN D   AL++ +AK N VR +LP
Sbjct: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP 120

Query: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
            ++A DP V +S G +TAV Y+GF S+ L+  +++DYL RVV PQ   ++GV+ +  +GG 
Sbjct: 121  EKAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQ 180

Query: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
            + A+R+WLD  +MA   ++AADV   + ANNYQ+  GQ  G++VL +   DT ++ VED 
Sbjct: 181  RLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDF 240

Query: 241  ESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVL 300
              L+++ +   + RL DI  V L+ +     A+ +G+ AV   +   PS NP+ I + + 
Sbjct: 241  RELIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEGIR 300

Query: 301  EMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLI 360
            ++LP++Q+ +P  + + + Y++   I+ SIHEV++T+VEA LIV++VI L LGSLR+VLI
Sbjct: 301  QLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLI 360

Query: 361  PIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESPF 420
             +V IPLS++G A +M M GFS NL+TLLAMVLAIGLVVDDAIVV+ENV RHI+EG+SP 
Sbjct: 361  AVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPI 420

Query: 421  RAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480
             AA+ G REIA PVIAMTLTL AVYAPI LMGG+TG+LF+EFALTLAG+V VSGIVALTL
Sbjct: 421  AAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVALTL 480

Query: 481  SPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLPM 540
            SP+M S +L+  +           L   ++  Y R+L   +AHR +    A +V  SLP 
Sbjct: 481  SPVMSSLLLQPGQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWISGGVALLVCLSLPW 540

Query: 541  LFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVFTGVP 600
            L+     ELAP ED+  ++     P +A+L+Y       +++++    E     +  G  
Sbjct: 541  LYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAETTDTWIINGTD 600

Query: 601  NSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQFV 660
                +FG  ++  W  RE S A V  ++   V DI G ++ AFQ+  LPG+  GLP+Q V
Sbjct: 601  GPAASFGGINLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVASLPGSSGGLPVQMV 660

Query: 661  ITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQDI 720
            + +  ++  LF     +    + + +F   D DL++++  +K+ +D+ KA + G++MQ I
Sbjct: 661  LRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVDRAKAASLGISMQAI 720

Query: 721  GITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSLVT 780
            G +L  ++ + Y+NR  L GRSY+VIPQ  +  RL P +++  YVRA DG ++PL +LV 
Sbjct: 721  GESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLTPAALSRQYVRAEDGSLVPLATLVR 780

Query: 781  IDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEARQ 840
            +D+   P  L  F+Q N++T+ A+PAPG +MG+A+ + E L +++LP G+SHD+  E+RQ
Sbjct: 781  LDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQL-TAELPPGFSHDWQSESRQ 839

Query: 841  YVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMNI 900
            YV EG AL   F  AL +I+LVLA Q+ESL DPL+I+V+VPL+ICGAL+ LA G AT+NI
Sbjct: 840  YVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGALLPLALGWATLNI 899

Query: 901  YSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIAG 960
            Y+Q+GL+TL+GLI+KHGIL+   A E Q+ + L R  A++ AA++RLRP+LMTTAAM  G
Sbjct: 900  YTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLRPVLMTTAAMTFG 959

Query: 961  LIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKHK 1009
            ++PL++A+GAGA  RF +G+VIV G+ +GTLFTLFVLP IY++LA  H+
Sbjct: 960  VLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLARDHR 1008