Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

 Score =  969 bits (2506), Expect = 0.0
 Identities = 493/1008 (48%), Positives = 708/1008 (70%), Gaps = 4/1008 (0%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            M FTD FI+RPVLA  +S LI+LLG QA  K+Q+R+YP+M N +ITV+T Y GA+A+ IQ
Sbjct: 1    MAFTDTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
            G+ITQPL+Q++A A+ ID+MTS S    S I++  ++  D +   +++LAK N VR++LP
Sbjct: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLP 120

Query: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
            +++EDP ++      +A++Y+ F S E+++ QITDYL RV+ P+L  + G++  ++ G  
Sbjct: 121  QDSEDPVLSKEAADASALMYVSFYSKEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
             +A+R+WLDP K+A   LSA DV + +   N+ SA G+  GE+V+ + +A T++ + E  
Sbjct: 181  VFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAF 240

Query: 241  ESLVVKAEKGTVTRLGDIAKVTL-AKSHDTYRASANGREAVVAAINAAPSANPINIAKDV 299
             +L +K    +   LGD+A+V + A+++DT  +S +G  +V   I A P+ANP+++ K+V
Sbjct: 241  AALPLKTSGDSRVLLGDVARVEMGAENYDTV-SSFDGTPSVYIGIKATPAANPLDVIKEV 299

Query: 300  LEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVL 359
              ++PEL+  +PS + +++ YD+T  I  SI EVIKT+ EA LIV+VV+ LFLG+LR+VL
Sbjct: 300  RRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVL 359

Query: 360  IPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESP 419
            IP+VTIPLS+IGV   MQMMG+S NL+TLLAMVLAIGLVVDDAIVV+EN+ RH++EG+SP
Sbjct: 360  IPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSP 419

Query: 420  FRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALT 479
            F AA+ G REIA+PV++MT+TL AVYAPI  + G+TG+LFKEFALTLAG+V +SGIVALT
Sbjct: 420  FDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALT 479

Query: 480  LSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLP 539
            LSPMMC+ +L+  + P+    ++  L +R+  RY+R+L A +  RPVV+ FA I+   +P
Sbjct: 480  LSPMMCALLLRREQNPSGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAVIILCLIP 539

Query: 540  MLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVFTGV 599
            +L KF  +ELAP+ED+GVI +M + P  ANLDYL    D    +    PE   +    G 
Sbjct: 540  VLLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTPLFKAFPEYYSSFQINGF 599

Query: 600  PNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQF 659
                   G   + PW++RE +Q  +   V   +++I G+ +  F +P LPG G GLP QF
Sbjct: 600  NGVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNLPSLPGTGEGLPFQF 659

Query: 660  VITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQD 719
            VI T  ++ +L  +A  + T  + +  F + D+DL FD   + ++ID+ KA   GV+M  
Sbjct: 660  VINTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVSMDT 719

Query: 720  IGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSLV 779
            +G TL+T++ +  +NR  L GRSY+VI QVER +R NP  +N+YYV+   G+++PL +L+
Sbjct: 720  LGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWLNNYYVKNDQGQLLPLSTLI 779

Query: 780  TIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEAR 839
            T+   A PR L  F QLN+A +  VP    ++G+A+   +++A  + P+G++ DY G AR
Sbjct: 780  TLTDRARPRQLNQFQQLNAAIIQGVPM--VSLGEALKTVQDIAREEAPEGFAFDYAGAAR 837

Query: 840  QYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMN 899
            QYV EGSAL+ TFGLALAIIFLVLA QFES RDPLVI+V+VPL+ICGAL+ L  G ++MN
Sbjct: 838  QYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFLGVSSMN 897

Query: 900  IYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIA 959
            IY+QVGL+TL+GLI+KHGILI E A + +    LS  EA+  AA +RLRP+LMTTAAM+ 
Sbjct: 898  IYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIEEAAAIRLRPVLMTTAAMVF 957

Query: 960  GLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEK 1007
            G++PL+ A+GAGA  RF IG+VI +G++IGTLFTLFVLP IY+ LA K
Sbjct: 958  GMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLAHK 1005