Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1017 a.a., efflux RND transporter permease subunit from Paraburkholderia sabiae LMG 24235

 Score =  892 bits (2305), Expect = 0.0
 Identities = 466/1009 (46%), Positives = 658/1009 (65%), Gaps = 3/1009 (0%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            M+FTD+FI+RPVLA  +S LI++LGL+++  ++V EYP+  N V+T+ T YYGASAD + 
Sbjct: 1    MKFTDIFIERPVLASVVSLLILVLGLRSLSALKVGEYPQTENGVVTIKTSYYGASADTMA 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
            GFITQPLE A+AQA  ID+M+S+S  G STIT T++LN D N AL+++  +  SVR+QLP
Sbjct: 61   GFITQPLESAIAQAQGIDYMSSKSSAGVSTITATLRLNYDSNRALTEINTQIASVRNQLP 120

Query: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
             +A+ P +TM  G TT  +Y+GF S+ L S+ +TDYL RVV P+L ++ GV + ++ GG 
Sbjct: 121  PQAQQPVLTMQVGQTTDAMYVGFHSDVLPSNNVTDYLLRVVKPKLDSIQGVQTAEILGGR 180

Query: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
            ++ALR WLD  ++AA  ++AADV + L  NNY +  G   G+ +  + +A T + +V+D 
Sbjct: 181  QFALRAWLDSNRLAAHKVTAADVSTALGNNNYLATLGTTKGQMISVDLNAGTDLHSVDDF 240

Query: 241  ESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVL 300
            + LVVK + G + RL D+A V L   +  +  + +G+ +V   I  AP AN +++AK V 
Sbjct: 241  KKLVVKQKNGAIVRLEDVANVVLGADNYDFNVAFSGKRSVFIGIKVAPDANVLDVAKRVK 300

Query: 301  EMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLI 360
             + P+LQK  P+ +  +++YD+T  IN +I EV+KT+VEA LIV VVI+LFLGS R V++
Sbjct: 301  TIFPDLQKQFPTGMTGDIVYDATDFINTAIEEVVKTLVEALLIVTVVISLFLGSFRTVIV 360

Query: 361  PIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIK-EGESP 419
            P++ +PLSLIG   VMQ++G+S NL+TLLA+VLAIGLVVDDAI+V+ENV+RH+K EG+ P
Sbjct: 361  PVIAMPLSLIGTFFVMQLLGYSINLLTLLALVLAIGLVVDDAIIVVENVERHMKEEGKQP 420

Query: 420  FRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALT 479
            F AA+I  RE+  P++AMT+ L AVY PI   GG+TG+LF EFA TL G+V VSG++AL+
Sbjct: 421  FEAALIAARELGGPILAMTVVLVAVYLPIGFQGGLTGALFTEFAFTLTGAVTVSGVIALS 480

Query: 480  LSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLP 539
            LSPMMCS+  + ++   +F   V    +R+   Y  +L A++   PV I    ++     
Sbjct: 481  LSPMMCSRFFRTDQESGRFARFVDRQFERVHRGYGGLLHAMLDTWPVFIVMGALLLCGTV 540

Query: 540  MLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVFTGV 599
             LF    SELAP ED+G+++    GP NA +  +    D V  I    PE       TG 
Sbjct: 541  YLFTTSKSELAPQEDQGIVLSKIQGPPNATIQQMQTYADQVFDISKQLPEYSQMFQLTGA 600

Query: 600  PNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQF 659
            P  NQ FG      W +R+     + N +      I G  V AFQ P LPGA  GLP+QF
Sbjct: 601  PTLNQGFGGVLFKTWDKRKKGATQLQNELQQKWDSIAGARVAAFQFPPLPGA-QGLPVQF 659

Query: 660  VITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQD 719
            VI+T   FE+L  ++  VL + + + MF + D DL  D     + +D+DK  + G++  D
Sbjct: 660  VISTTEPFENLNEVSQAVLQKARESGMFFFVDSDLKIDKPESVLLVDRDKVASLGLSQSD 719

Query: 720  IGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSLV 779
            +G TL   +   YVN   + GRSY+VIPQV +  RLNP  +  YY+R  DG VI   ++ 
Sbjct: 720  VGQTLGAALGGNYVNYFSIAGRSYKVIPQVLQTDRLNPSQVLDYYLRTPDGSVISASTVT 779

Query: 780  TIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEAR 839
             +     P S+ HF QLNSAT+  V APG + G+ +++    ++   P GY+ DY G +R
Sbjct: 780  HLKQTIVPESINHFQQLNSATISGVLAPGISQGEVLDFLRKASTDVAPTGYTTDYSGLSR 839

Query: 840  QYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMN 899
            Q+V E      T   A  I+FL LA QFES RDP+VI+VSVP+A+ GALI +  G +T+N
Sbjct: 840  QFVQESGGFVITLLFAAIIVFLALAAQFESFRDPVVILVSVPMALFGALIFINMGLSTLN 899

Query: 900  IYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIA 959
            IY+QVGL+TL+GLI+KHGILI + A E Q   +  R EA+  AA VRLRPILMTTAAM+ 
Sbjct: 900  IYTQVGLVTLMGLISKHGILIVQFANELQRAGRGKR-EALEEAAGVRLRPILMTTAAMVL 958

Query: 960  GLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKH 1008
            G++PL+ A+GAGAA R ++G+VI +GL+IGTLFTLFV+P +Y  L   H
Sbjct: 959  GVLPLVTASGAGAAGRNAMGLVIFTGLSIGTLFTLFVVPAMYMLLGADH 1007