Pairwise Alignments
Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1052 a.a., multidrug efflux RND transporter permease subunit from Magnetospirillum magneticum AMB-1
Score = 520 bits (1339), Expect = e-151
Identities = 315/1034 (30%), Positives = 538/1034 (52%), Gaps = 35/1034 (3%)
Query: 1 MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
M + FI RP+ A IS +I+L GL ++ + + EYPE+ + V + GA+ +I
Sbjct: 1 MTLSKFFIDRPIFAGVISTVILLAGLISMLLLPISEYPEVVPPSVIVKAQFPGANPKVIA 60
Query: 61 GFITQPLEQAVAQADNIDFMTSQSVL-GRSTITVTMKLNTDPNAALSDVLAKTNSVRSQL 119
+ PLE+ + +N+ +M SQ+ G T+TV+ K+ TDP+ A V + N +L
Sbjct: 61 QTVATPLEEQINGVENMLYMFSQAASDGTMTLTVSFKIGTDPDLATQLVQNRVNQALPRL 120
Query: 120 PKEAEDPTVTM--STGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLY 177
P+ VT S+ T V+++ + + +Y V QL + GV S+ L+
Sbjct: 121 PEVTRSLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKIQGVGSVQLF 180
Query: 178 GGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNG-------SA 230
G YA+R+WLDP K+A +++A +V++ + N Q A G IG +G +A
Sbjct: 181 GSGDYAMRIWLDPEKVAERSMTADEVVAAIRRQNVQVAAG-VIGGPPYGSGVELQLPINA 239
Query: 231 DTQVSTVEDLESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSA 290
+++ + +++K + G VTRL D+A+V + + R+ + + AV + +P +
Sbjct: 240 QGRLTDADQFAEIIIKRDSGVVTRLKDVARVEIDAAQYGLRSLLDNKPAVAIPVFQSPGS 299
Query: 291 NPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITL 350
N I I+ V + EL+KN P ++ ++YD TV + SI V+ T++EA +V++V+ L
Sbjct: 300 NAIEISNQVRAAMAELKKNFPEGLDYAIVYDPTVFVRGSIEAVVHTLLEAVALVVLVVIL 359
Query: 351 FLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVD 410
FL + RA +IP++ +P+S++G VM + GFS N ++L +VLAIG+VVDDAIVV+ENV+
Sbjct: 360 FLQTWRASIIPLLAVPISIVGTFAVMHIFGFSINALSLFGLVLAIGIVVDDAIVVVENVE 419
Query: 411 RHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSV 470
R+I+ G SP A I E+ P+IA+ L L AV+ PIA + G+TG +++FALT+A S
Sbjct: 420 RNIENGLSPRDATIKAMGEVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFST 479
Query: 471 FVSGIVALTLSPMMCSKMLKANEAP------------NKFELKVHHLLDRMTARYERMLT 518
+S +LTLSP + +LK + AP +F + + + Y R +T
Sbjct: 480 VISAFNSLTLSPALAVTLLKGHGAPKDALTRGMDRVFGRFFAGFNRVFHGGSHAYGRGVT 539
Query: 519 AVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMD 578
++ + + ++ + + F+ +P P++DK ++ P A L+ + +
Sbjct: 540 GILGRKSAAMLIYLLLLGATYVGFQAVPPGFVPTQDKQYLVSFAQLPDGATLERTESVIR 599
Query: 579 DVNKILSDQPEVQFAQVFTG------VPNSNQAFGIASMVPWSQR---EASQATVTNRVG 629
++ I +P V+ A F G + + + ++ P+ +R E S ++ ++
Sbjct: 600 AMSDIALKEPGVESAVAFPGLSINGFINSPSAGIVFVTLKPFEERRSAELSGFAISQKLQ 659
Query: 630 TLVQDIPGMAVTAFQMPELPGAGS--GLPIQFVITTPSNFESLFTIATDVLTEVKANPMF 687
+ + F P + G G+ G +Q T +E+L V + P
Sbjct: 660 MKYLGVKDAFIAIFPPPPVQGLGTIGGFKLQVEDRTDQGYEALDQTMKAVQAKAAQTPEL 719
Query: 688 VYSDLDLNFDSATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIP 747
+ +D+ KA GV +QD+ + + YVN + GR+Y+VI
Sbjct: 720 ARVFSSYKIGMPQLYTELDRTKAAQLGVDVQDVFSAMQIYLGSLYVNDFNKFGRTYQVIA 779
Query: 748 QVERKWRLNPESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAP 807
Q +R++R P+ + R +G+++PLGS+V + P S +N SA V PAP
Sbjct: 780 QADRQFRSKPDDILKLQTRNFEGRMVPLGSIVRVTETTGPDSAMRYNAFRSADVNGGPAP 839
Query: 808 GTAMGDAINWFENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQF 867
G + G A + LPKG +++ Q + G+ F + + ++FLVLA Q+
Sbjct: 840 GYSTGQAQAAMTRILDETLPKGMGYEWTELTYQQILAGNTAMLVFPICVLLVFLVLAAQY 899
Query: 868 ESLRDPLVIMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE 927
ESL P I++ VP+ + A+ + N+++Q+GL L+GL K+ ILI E A+E
Sbjct: 900 ESLFLPAAIILIVPMCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFAREL 959
Query: 928 QLHNKLSRIEAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLA 987
++ K +EA + AA +RLRPILMT+ A I G++PL+ ++GAGA R ++G+ + G+
Sbjct: 960 EIAGK-GTVEAAVEAAHLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFFGML 1018
Query: 988 IGTLFTLFVLPVIY 1001
T F LF+ PV Y
Sbjct: 1019 GVTFFGLFLTPVFY 1032
Score = 58.2 bits (139), Expect = 3e-12
Identities = 84/440 (19%), Positives = 170/440 (38%), Gaps = 35/440 (7%)
Query: 600 PNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQ------MPELPGAGS 653
P Q G+ +M+ + AS T+T V + P +A Q +P LP
Sbjct: 66 PLEEQINGVENMLYMFSQAASDGTMTLTVSFKIGTDPDLATQLVQNRVNQALPRLPEVTR 125
Query: 654 GLPIQFV-----------ITTPSNFESLFTIATDVLTEVK---ANPMFVYSDLDLNFDSA 699
L + V +T+P+ + + L VK A V S
Sbjct: 126 SLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKIQGVGSVQLFGSGDY 185
Query: 700 TMKINIDKDKAGAYGVTMQDIGITL---STMMADGYVNRIDLNGRSYEVIPQVERKWRL- 755
M+I +D +K +T ++ + + +A G + G E+ + + RL
Sbjct: 186 AMRIWLDPEKVAERSMTADEVVAAIRRQNVQVAAGVIGGPPY-GSGVELQLPINAQGRLT 244
Query: 756 NPESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAI 815
+ + ++ G V L + +++ A L L++ A+P + +AI
Sbjct: 245 DADQFAEIIIKRDSGVVTRLKDVARVEIDAAQYGLRSL--LDNKPAVAIPVFQSPGSNAI 302
Query: 816 NWFENLASS------KLPKGYSHDYMGEARQYVTEG-SALYATFGLALAIIFLVLAIQFE 868
+ ++ P+G + + + +V A+ T A+A++ LV+ + +
Sbjct: 303 EISNQVRAAMAELKKNFPEGLDYAIVYDPTVFVRGSIEAVVHTLLEAVALVVLVVILFLQ 362
Query: 869 SLRDPLVIMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQ 928
+ R ++ +++VP++I G + ++N S GL+ +G++ I++ E E
Sbjct: 363 TWRASIIPLLAVPISIVGTFAVMHIFGFSINALSLFGLVLAIGIVVDDAIVVVENV-ERN 421
Query: 929 LHNKLSRIEAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAI 988
+ N LS +A + A PI+ + A +P+ + +G + I I
Sbjct: 422 IENGLSPRDATIKAMGEVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFSTVI 481
Query: 989 GTLFTLFVLPVIYSYLAEKH 1008
+L + P + L + H
Sbjct: 482 SAFNSLTLSPALAVTLLKGH 501