Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., multidrug efflux RND transporter permease AcrD from Escherichia coli ECRC62

 Score =  503 bits (1294), Expect = e-146
 Identities = 318/1038 (30%), Positives = 533/1038 (51%), Gaps = 38/1038 (3%)

Query: 7    FIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGFITQP 66
            FI RP+ A  ++ L+ L G  AIF + V +YP++    + V+  Y GASA  ++  +TQ 
Sbjct: 5    FIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENTVTQV 64

Query: 67   LEQAVAQADNIDFMTSQSV-LGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPKEAED 125
            +EQ +   DN+ +M+SQS   G++++T++ K  TDP+ A+  V  +  S   +LP+  ++
Sbjct: 65   IEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQN 124

Query: 126  PTVTMSTGSTTAVLYIGFTSNE--LASSQITDYLERVVNPQLYAVNGVSSIDLYGGMKYA 183
              VT+     T +L I F S +  +    I DY+   +   L  VNGV  ID YG  +Y+
Sbjct: 125  QGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS-QYS 183

Query: 184  LRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIG------EFVLYNGSADTQVSTV 237
            +R+WLDPAK+ +  ++A DV   + + N Q A GQ  G      + +    +A + + T 
Sbjct: 184  MRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLLQTP 243

Query: 238  EDLESLVVKAEK-GTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIA 296
            E    + ++  + G+  RLGD+A V +      Y +  NG+ A    +  A  AN +  A
Sbjct: 244  EQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATA 303

Query: 297  KDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLR 356
            + VL  L EL +  P  +E  V Y++T  +  SI +V+KT++EA  +V +V+ LFL + R
Sbjct: 304  ELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFR 363

Query: 357  AVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHI-KE 415
            A LIP + +P+ L+G   V+   G+S N +T+ AMVLAIGL+VDDAIVV+ENV+R + +E
Sbjct: 364  ATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIMSEE 423

Query: 416  GESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGI 475
            G +P  A      +I   ++ + + L AV+ P+A  GG TG+++++F++T+  ++ +S +
Sbjct: 424  GLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVL 483

Query: 476  VALTLSPMMCSKMLK-----ANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAF 530
            VA+ L+P +C+ +LK      +     F    + + +R   RYE+ +  ++      I  
Sbjct: 484  VAMILTPALCATLLKPLKKGEHHGQKGFFAWFNQMFNRNAERYEKGVAKILHRSLRWIVI 543

Query: 531  AFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEV 590
              ++   +  LF  +P+   P ED+G+       PS +        ++ + K      + 
Sbjct: 544  YVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTHEKD 603

Query: 591  QFAQVFT------GVPNSNQAFGIASMVPWSQREASQAT---VTNRVGTLVQDIPGMAVT 641
                VF       G    N A     +  WS+R++   T   +  R       I    V 
Sbjct: 604  NIMSVFATVGSGPGGNGQNVARMFIRLKDWSERDSKTGTSFAIIERATKAFNKIKEARVI 663

Query: 642  AFQMPELPGAGS--GLPIQFVITTPSNFESLFTIATDVLTEVKANPMFV---YSDLDLNF 696
            A   P + G GS  G  ++      +  ++L      +L     NP      ++ LD   
Sbjct: 664  ASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAAENPELTRVRHNGLD--- 720

Query: 697  DSATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLN 756
            DS  ++I+ID+ KA A GV + DI  TL T     YVN     GR  +V  Q    +R+ 
Sbjct: 721  DSPQLQIDIDQRKAQALGVDIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRML 780

Query: 757  PESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAIN 816
            P+ +N +YVR  DG ++P  +  T         L  +N  ++  +    APG + G A++
Sbjct: 781  PDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMD 840

Query: 817  WFENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVI 876
              E+L   +LP G+  ++   + Q    G+   A + ++L ++FL LA  +ES   P  +
Sbjct: 841  IMESLV-KQLPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSV 899

Query: 877  MVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRI 936
            M+ VPL + GAL+A        ++Y QVGL+T++GL  K+ ILI E A E          
Sbjct: 900  MLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGH-DLF 958

Query: 937  EAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFV 996
            EA +HA + RLRPILMT+ A I G++P+  +TGAG+  + ++G  ++ G+   T+  ++ 
Sbjct: 959  EATLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYF 1018

Query: 997  LPVIYSYLAEKH--KPLP 1012
            +P+ +  +  +   KP P
Sbjct: 1019 VPLFFVLVRRRFPLKPRP 1036