Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1048 a.a., multidrug efflux RND transporter permease subunit from Dickeya dadantii 3937

 Score =  490 bits (1262), Expect = e-142
 Identities = 318/1021 (31%), Positives = 528/1021 (51%), Gaps = 28/1021 (2%)

Query: 7    FIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGFITQP 66
            FI RP+ A  I+ +++L G  AI K+ + +YP +    + ++  Y GA A  +Q  +TQ 
Sbjct: 5    FIDRPIFAWVIAIMVMLTGTLAILKLPIAQYPTIAPPAVQITANYPGADAKTLQDTVTQV 64

Query: 67   LEQAVAQADNIDFMTSQS-VLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPKEAED 125
            +EQ +   D + +M+S S   G   IT+T   + +P+ A   V  K       LP+E + 
Sbjct: 65   IEQNMNGIDKLLYMSSNSDSSGTVQITLTFDADANPDIAQVQVQNKLQLAMPLLPQEVQQ 124

Query: 126  PTVTMSTGSTTAVLYIGFTS--NELASSQITDYLERVVNPQLYAVNGVSSIDLYGGMKYA 183
              V++   S++ ++ +GF S  N +    I D++   +   +  V GV    L+G  +YA
Sbjct: 125  QGVSVQKSSSSFLMVLGFISDDNNMTQQDIADFVGASIKDPISRVRGVGDTQLFGA-QYA 183

Query: 184  LRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVL----YNGS--ADTQVSTV 237
            +R+WLDP K+    L+ +DV+S +   N Q A GQ  G   +     N S  A T++++ 
Sbjct: 184  MRIWLDPDKLNNYQLTTSDVVSAIQVQNNQIAAGQLGGTPPVPGQKLNASIIAQTRLNSP 243

Query: 238  EDLESLVVKAEK-GTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIA 296
            E   ++++K  + G+  RL ++A++ L     +  A  NGR A    I  A  AN ++ A
Sbjct: 244  EQFGNILLKVNQDGSQVRLNNVARIELGGESYSVIARYNGRPAAGLGIKLATGANALDTA 303

Query: 297  KDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLR 356
              V   + +LQ   P+ +++   YD+T  +  SI+EV+KT++EA ++V VV+ LFL + R
Sbjct: 304  SAVKAEITKLQSTFPAGLKVVYPYDTTPFVKISIYEVVKTLLEAIVLVFVVMYLFLQNFR 363

Query: 357  AVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHI-KE 415
            A LIP + +P+ L+G   ++   G+S N +T+ AMVLAIGL+VDDAIVV+ENV+R + +E
Sbjct: 364  ATLIPTIAVPVVLLGTFSILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERVMAEE 423

Query: 416  GESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGI 475
            G SP  A      +I   ++ + L L AV+ P+A  GG TG+++++F++T+  S+ +S +
Sbjct: 424  GLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFSGGSTGAIYRQFSVTIVSSMVLSVL 483

Query: 476  VALTLSPMMCSKMLK--ANEAPNK-FELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAF 532
            VAL L+P +C+ +LK   N    K F    + L D+ T  Y   +  ++      +    
Sbjct: 484  VALILTPALCATILKPITNHGEKKGFFGWFNRLFDKSTHHYTNSVANILRSTGRYVVVYL 543

Query: 533  IVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQF 592
            IV A L ++F  +PS   P ED+GV++ M   P  A  +     +D VN       +   
Sbjct: 544  IVVAGLGLMFTRLPSSFLPQEDQGVLLTMVQLPVGATQESTQKVLDQVNDYYLQHEKENV 603

Query: 593  AQVFT----GVPNSNQAFGI--ASMVPWSQREASQATVTNRVGT---LVQDIPGMAVTAF 643
              VFT    G     Q  GI  AS+  W +R  +   V   +G        I    V  F
Sbjct: 604  KSVFTVNGFGFAGRGQNMGIAFASLKDWDERSGAANKVDAIIGRAFGAFSQIKEALVIPF 663

Query: 644  QMPELP--GAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANP-MFVYSDLDLNFDSAT 700
             +P +   G  SG   + +       + L      +L  +  +P   V    +   D   
Sbjct: 664  NIPAIVELGTASGFDFELIDQNNLGHDKLMAARNQLLGMIAQHPDTLVRVRPNGMEDMPQ 723

Query: 701  MKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESM 760
             ++ ID++KA + GV++  I  TLST +   YVN     GR  +V  Q E K+R+ P  +
Sbjct: 724  YRLEIDQEKAESLGVSIATINATLSTALGGTYVNDFIDRGRVKKVYVQAEAKFRMLPNDI 783

Query: 761  NSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFEN 820
              +YVR   G+++P  +  +         L  +N L +  +    APG + G+A+   E 
Sbjct: 784  QKWYVRGTSGQMVPFSAFASERWEYGSPRLERYNGLPAVELVGEAAPGKSTGEAMALMEE 843

Query: 821  LASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSV 880
            LA ++LP G   D+ G + Q    G+   A   ++  ++FL LA  +ES   P  +M+ V
Sbjct: 844  LA-AQLPPGIGFDWTGMSYQERLAGNQAPALIIISAIVVFLCLAALYESWSIPFSVMLVV 902

Query: 881  PLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVM 940
            PL + GA++A        ++Y +VGL+T +GL  K+ ILI E AK+         +EA +
Sbjct: 903  PLGVFGAVMAAGLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGLVEATL 962

Query: 941  HAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVI 1000
             A ++RLRPILMT+ A I G++PL+ +TGAG+  + ++G  ++ G+   T+  ++ +PV 
Sbjct: 963  DAVRMRLRPILMTSLAFILGVVPLVISTGAGSGAQNAVGTGVMGGMITATVLAIYFVPVF 1022

Query: 1001 Y 1001
            +
Sbjct: 1023 F 1023