Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1029 a.a., RND multidrug efflux transporter from Agrobacterium fabrum C58

 Score =  517 bits (1332), Expect = e-150
 Identities = 329/1022 (32%), Positives = 549/1022 (53%), Gaps = 33/1022 (3%)

Query: 7    FIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGFITQP 66
            FI+RPV A  I+ +I+L G+ AI+ + + +YP++  T + VS  Y GASA+ ++  +T  
Sbjct: 5    FIRRPVFAWVIAIVIMLGGVLAIWTLSISQYPDIAPTTVRVSATYNGASAETVEKSVTTI 64

Query: 67   LEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPKEAEDP 126
            +E  +   D++ +MTS S  G + +T+T   +  P+ A   V  K   V+SQLP   +  
Sbjct: 65   IEDGMTGLDDLTYMTSSSSTGSAEVTLTFGNSILPDIAQVQVQNKLQLVQSQLPDTVQQQ 124

Query: 127  TVTMSTGSTTAVLYIGF---TSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGMKYA 183
             + +S  ST+++L +G    T  +  S+ + D     V  Q+  + GV SI+++G  +YA
Sbjct: 125  GLQVSR-STSSILMVGALISTDGKRNSADLGDVFSSRVEDQIKRLEGVGSINVFGS-EYA 182

Query: 184  LRVWLDPAKMAALNLSAADVMSILNANNYQSATGQ------AIGEFVLYNGSADTQVSTV 237
            +R+WLDP K+    L+ ADV   + + N Q + G         G+ +    +A +Q++TV
Sbjct: 183  MRIWLDPFKLNKYQLTTADVTGAIQSQNTQVSVGSLGAVPAVKGQQLNVTVTAQSQLTTV 242

Query: 238  EDLESLVVKAEK-GTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIA 296
             D E +++K EK G   RL D+A++ + +      + +NGR +   A+N A  AN ++ A
Sbjct: 243  ADFEKVILKVEKDGATVRLSDVARIEIGQETYGGDSRSNGRPSAGFAVNLATGANALDTA 302

Query: 297  KDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLR 356
              V   L  ++ ++P  + +   YD+T  +  SI +V+ T++EA ++V VV+ +FL +LR
Sbjct: 303  ARVKAALTNVEGSLPEGVSIEYPYDTTPFVKLSIEKVVHTLIEAIILVFVVLLVFLQNLR 362

Query: 357  AVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHI-KE 415
            A  IP++ +P+ L+G   V+ + G+S N +T+ AMVLAIGL+VDDAIVV+ENV+R + +E
Sbjct: 363  ATFIPMIAVPVVLLGTFGVLALTGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMSEE 422

Query: 416  GESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGI 475
            G SP  A      EI   +I + L L AV+ P+A  GG TG ++++F++T+  ++ +S +
Sbjct: 423  GLSPVEATEKSMGEITGAIIGIALVLTAVFIPMAFFGGSTGIIYRQFSITIVSAMLLSAV 482

Query: 476  VALTLSPMMCSKMLKANEAPNKFE---LKVHHLLDRMTARYERMLTAVMAHRP--VVIAF 530
            VA+ L+P +C+ MLK  +   K        +    + T  Y   +   +  RP  V+I F
Sbjct: 483  VAIVLTPALCATMLKPIDHHKKKRGPGAWFNRGFGKTTDGYVSSI-GYLLKRPLRVMIIF 541

Query: 531  AFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEV 590
            A +V       F  +PS   P ED+GV++ +   P+ +N++     +  V     ++   
Sbjct: 542  A-VVIGGCVWFFSKLPSSFLPQEDQGVLLTIIQTPTGSNIERTNEVVKQVENYFREKEAA 600

Query: 591  QFAQVFTGVPNSNQAFGIASMVPWSQRE--ASQATVTNRVGTLVQDIPGMAV---TAFQM 645
                VF  +  S    G  + + +++ +  A +       G +VQ   G       A   
Sbjct: 601  NVESVFGVLGFSFSGSGQNNAIVFTKLKDFAERTAPDQHAGAIVQRAMGTFFGFRDAQVF 660

Query: 646  PELP------GAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSA 699
            P LP      G  SG  +  V +  +  ++L   + +++     NP       D   +  
Sbjct: 661  PLLPPAIQGMGTSSGFSMYLVDSGRNGTDALTASSKELIALATGNPKISSLRSDSQDNET 720

Query: 700  TMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPES 759
             MKI +D++K GA GV +  + + LST+ A   VN   LNG    V  Q +  +R+ P+ 
Sbjct: 721  QMKIVLDQEKMGAMGVDLSSVNLMLSTIFAGRDVNDFTLNGELKPVYVQGDAPYRMQPDD 780

Query: 760  MNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFE 819
            +  +Y R   G+++P  S   +  V  P SL  FN   + ++      G A G+A++  E
Sbjct: 781  LKYWYARNTTGEMVPFSSFSEVKWVNAPPSLARFNGTGAISLEGTAGTGVASGEAMDEME 840

Query: 820  NLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVS 879
             L +S LP GY+  + G + Q    GS     + L++ I+FL LA  +ES   P  ++++
Sbjct: 841  RLTAS-LPGGYTVAWQGISYQERLSGSQAPMLYALSVLIVFLCLAALYESWSIPFSVILA 899

Query: 880  VPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAV 939
            VP+ + GAL A  +   T ++Y +VGL+T +GL  K+ ILI E AKE Q H  LS +EA 
Sbjct: 900  VPVGVLGALTAAHFFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAKERQEHG-LSLVEAA 958

Query: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999
            + AAK+RLRPI+MT+ A I G++PL  ATGAG+A + +IGI ++ G+   TL  +F +P 
Sbjct: 959  LEAAKLRLRPIIMTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFFVPS 1018

Query: 1000 IY 1001
             +
Sbjct: 1019 FF 1020