Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1048 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

 Score =  531 bits (1367), Expect = e-154
 Identities = 338/1020 (33%), Positives = 542/1020 (53%), Gaps = 24/1020 (2%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            + FT +F++RP+LA  ++ L+V+ GL A+  ++VRE P++    I+V T Y GA+ + I 
Sbjct: 12   LAFTALFVRRPILAAVLNTLLVVAGLAALVGVEVRELPDVDRPSISVRTTYEGAAPETID 71

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
              +TQ +E AVA+   I  + S S  G S +T+    N D   A +DV      V +QLP
Sbjct: 72   QEVTQTIEGAVARVSGIKSIASSSQFGTSRVTMEFSDNVDMAVAANDVRDAIGRVTNQLP 131

Query: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
             +A++P +  +   +  ++ +  TS+ L+   +T  ++  +  +L AV+GV+ ++LYG  
Sbjct: 132  DDADEPQIIKADSDSQPIMRLAVTSSTLSMEDLTKLVDDEIIDRLAAVDGVADVELYGDQ 191

Query: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
            +   RV L+ A +A+  L+  DV + L +       G            A   ++  ED 
Sbjct: 192  EKVFRVDLNQAALASRGLTVTDVSNALASAALDVPAGSLKSTTQDIVVRATASLTKPEDF 251

Query: 241  ESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVL 300
             +L++K       RL D+A V L     +    +NG + V   +     +N +NI+  V 
Sbjct: 252  SNLLIKDN----IRLRDVATVMLGADDQSTSLRSNGVQGVGLGVIRQAQSNTLNISTGVK 307

Query: 301  EMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLI 360
              +  +  N+P    + V  D  V I  ++HEV   +  +ALIV+VV+ LF    RA LI
Sbjct: 308  AAVDAMSANLPEGTRIVVTSDDAVFIEGALHEVELALGLSALIVVVVLYLFFRDWRATLI 367

Query: 361  PIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESPF 420
            P +T+P++LIG  + + M+GFS N++TLLA+VLA GLVVDDAIVVLEN+ R   EG  P 
Sbjct: 368  PAITMPVALIGTIVAIYMVGFSVNILTLLAIVLATGLVVDDAIVVLENIVRRRAEGMGPR 427

Query: 421  RAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480
             AA++GT+E+   VIA T TL AV+ P++ + G  G LF+EF   LA +V +S I ALTL
Sbjct: 428  AAAVLGTQEVFFAVIATTATLAAVFIPLSFLPGQLGGLFREFGFVLAFAVGLSSITALTL 487

Query: 481  SPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLPM 540
             PM+ S+MLK         L        + A   +   A   + P+++    ++F+ L  
Sbjct: 488  CPMLASRMLKQGLKEPTGPLM---WFGNVFASTYKTTLAACLNNPLIVIVVALIFSGLSW 544

Query: 541  L-FKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKI------LSDQPEVQFA 593
            + F  I +EL P ED+  +M+  T P   +L+Y   T D + +I      L D  E++  
Sbjct: 545  IAFGMIQNELTPREDRASVMMRVTAPQGVSLEY---TRDQLQRIEENLQPLRDSGEIRNV 601

Query: 594  QVFTGV-PNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQMPEL--PG 650
               TG+  +SN  F + ++ PW+ RE +Q  +   V +    +P +   A Q   L   G
Sbjct: 602  YSITGMNGSSNTGFMVLTLAPWADRERTQNQIAADVTSAANKVPALRGNAMQPNSLRIRG 661

Query: 651  AGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKA 710
            AG+GL +  V    SN+ +L      +L  ++   +F    LD   + A + ++ID+++A
Sbjct: 662  AGNGLQMAMV---GSNYPALTEATQKLLLSMEEGGLFDTPRLDNEPNQAQLSVSIDRERA 718

Query: 711  GAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAADG 770
               G+ +  +  ++ +++    +  + ++G +  V      +   +P  + + +++  DG
Sbjct: 719  SDLGIDITGLSRSMQSLLEGRSIVDVFVDGDAIPVRLLSSTRPINDPTDLENVFLKTGDG 778

Query: 771  KVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLPKGY 830
            K++P+  + T+   A    L    QL S    A    G ++G A+     LA S +P G 
Sbjct: 779  KIVPMSVIATLKENAVAPQLNREQQLPSVGFTANLKDGVSLGQAMEKVNELAQSVMPSGA 838

Query: 831  SHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALIA 890
                +GEA       S +  TFG A+AIIFLVLA QFES+   ++IM +VPL +  A+IA
Sbjct: 839  RLLPLGEAATLEENSSGMLLTFGFAIAIIFLVLAAQFESVLSSVIIMSTVPLGLACAVIA 898

Query: 891  LAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPI 950
            L    +++N+YSQ+GL+ LVG++ K+GILI E A   +      R EA+  A  +RLRP+
Sbjct: 899  LLVTGSSLNVYSQIGLVLLVGVMAKNGILIVEFANHLRDQGATVR-EAIEKATSIRLRPV 957

Query: 951  LMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKHKP 1010
            +MT  A I G +PL+ A GAGA  R ++G VIV GL   TL TL++ PV Y  +A   KP
Sbjct: 958  MMTMIATILGGVPLVLAQGAGAEARIALGWVIVGGLGFATLVTLYITPVSYLLIARFAKP 1017