Pairwise Alignments

Query, 298 a.a., HTH-type transcriptional activator IlvY from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., LysR family regulatory protein CidR from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 83.6 bits (205), Expect = 5e-21
 Identities = 60/247 (24%), Positives = 119/247 (48%), Gaps = 5/247 (2%)

Query: 1   MNIKTLQLFMHLCDCKNFSKTASAMHLSPSALSRQIQKLEQDLGHTLFLRDNRSVELTPA 60
           M+I+TL+ F+ +   ++F++ A  + ++   +S+ ++ LE +L  TL +RD R + LT  
Sbjct: 1   MDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELNCTLLIRDGRKLLLTDT 60

Query: 61  AHQLLPVAARIIHDWRQFTTELNDDSQELRGEIKLFCSVTASYSHLPELLSSFRLKHPYI 120
              +      I+ ++RQ   EL+D +   +G ++L          +   +S FR ++P +
Sbjct: 61  GRVVFERGLAILAEFRQLEAELSDINHLNKGVLRLGIPPMVGML-MAGPISLFRQRYPGV 119

Query: 121 EFKLLTGDPAQAIDKILHDEADIAISAMPEQLPSRIEFATISEIPLSVIAP-LGISSFMD 179
           E K+           +++ E D+A++A+P +  S +   ++   PL V+ P  G  +  D
Sbjct: 120 ELKISEFGGLTVQQAVMNGELDVAMTALPVEEASGLTTLSLFSHPLCVLVPRSGQWTTGD 179

Query: 180 ELQKEQPDWNEIPFIVPESGTARDR-ANTWFKQMKIKPNIYAQIAGHEAIVSLVALGCGV 238
            +  E     E P ++     A  R   T F Q  +KP I  +    + + ++V  G G+
Sbjct: 180 SIAPEA--LAEHPLLIYNEDFALSRQLMTLFSQHDVKPRIAVRSGQWDFLAAMVQAGVGI 237

Query: 239 GIAPDVV 245
            I P+ +
Sbjct: 238 AILPEPI 244



 Score = 23.9 bits (50), Expect = 0.005
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 140 EADIAISAMPEQLPSRIEFATISEIPL 166
           +A + I+ +PE +  R++ AT+  +PL
Sbjct: 232 QAGVGIAILPEPICQRLDKATLRWLPL 258