Pairwise Alignments

Query, 611 a.a., vitamin B12 transporter BtuB from Vibrio cholerae E7946 ATCC 55056

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (262), Expect = 7e-27
 Identities = 170/719 (23%), Positives = 282/719 (39%), Gaps = 167/719 (23%)

Query: 1   MQKSALAIALASLLTPISYLHAN-EAQPQETVVVTANRFEQKASSTLADVEIITRQDIEQ 59
           M+ S ++ A+ S+L    + HA  E    E VVVTANR EQ  S     V ++  + +E+
Sbjct: 1   MKLSPVSAAVLSVLAA-GFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEK 59

Query: 60  TQAKTLPELLRRLTGVQITQNGGRGQLASLFVRGTSSDQVLVLVDGIRFARAAKGAVDFN 119
                L + L +  GV +T  GG G+  ++ +RG + +++ ++ DGI+ A    GA D N
Sbjct: 60  QGKTELYDALNQEPGVSVT--GGAGRPQNITIRGMTGNRIAIVRDGIQSA-DGYGAADIN 116

Query: 120 Q------IPLTYVDRIEYVRGARASLYGSEAIGGVINIITKARSQQQGTTVSAGLGSLDY 173
                    L+ V +I+ V+GA ++LYGS AIGGV+ I +KA            L   DY
Sbjct: 117 DKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDY--------LYHRDY 168

Query: 174 QELSIASGVAIGEKGQMNVALGTESDKG---------------------YNVRPVPGVND 212
              +  +   I  + Q N AL      G                     YN R V G N 
Sbjct: 169 YVDAALTYSGISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNFNQDLYN-REVDGYNL 227

Query: 213 GDRHGFRSDNALLGYVHQFDESWSLFANARAYENIYQYDNSYGTRDYKEAEKDDLSF-TI 271
           G  H +  ++AL    H   E +  +A  R   +  Q D+ +    + E ++      ++
Sbjct: 228 GFSHHYWLNDALRLKTHL--EYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRLASV 285

Query: 272 GTQYQSE-RWVSELQLTTQKQKSWDYTQS----------------KGKYSDTSDN----- 309
           G  Y +   W+  L+     + + + TQ+                + +  D   N     
Sbjct: 286 GADYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALG 345

Query: 310 ------LEQRNIQWINRYLVNDVWTFAGGVDWR--------DESYIDKTADKEFDRSNTA 355
                  E +  +W++++          G D++        + S  D  AD+ F  +   
Sbjct: 346 ATLNAQKEWQQGEWLHQFAYG---MSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREY 402

Query: 356 AFAVVAAE---WQQWLLEASLRFD--------DNQEYG--------SQTTHNIALGYQFI 396
            F V   +      W L A LRFD         ++ +G        S+ + + ++ YQ+ 
Sbjct: 403 RFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWH 462

Query: 397 PEFGVKASYGSAFKAPNLYQQYDPSYG----------------NVNLQPEDADSAELS-- 438
           PE+    SY   F+AP+    YD +YG                N  L+ E +DS EL   
Sbjct: 463 PEWNTYLSYNHGFRAPS----YDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSK 518

Query: 439 ------------FYGLFSG-IKWSITGYDYKINNLIDYNSTTKNYQNVIGESNIKGVEFT 485
                       FY +F   I     GYD    ++I      + YQN+ G     G E +
Sbjct: 519 YDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVI------QQYQNIAGVKTY-GAEMS 571

Query: 486 AEFATG---IVQHQLS-VDLKDADDSKGKT---LQRRAEHMYKWNALVAFEQVDWSIGYQ 538
                     V+++L  VD KD ++   +T   L+   +  Y+     A+ +++W+    
Sbjct: 572 VMHRLDDRWSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAMS 631

Query: 539 YV-------GKRPDLDYNTYPTQNITLDAYSLVDTSVSYYVTDSTTISARIDNLLDKEY 590
            V       GK          T+  T   +   D  ++Y      + S  + NLLD+EY
Sbjct: 632 RVPTCTTEQGKE---------TECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREY 681