Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Rhodanobacter sp000427505 FW510-R12

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%)

Query: 188 FTQPNAKVAEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQNFERVLATELAKPSVE 246
           F Q NA + + M+  A++       D +L+L+CG GNF+L +A+    V+  E     VE
Sbjct: 276 FVQVNAGMNQLMMARAMELLDPQPTDRVLDLFCGLGNFTLPIARRVAEVVGVEGEHGLVE 335

Query: 247 AAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSG 306
            A  N A N I N      +        E +R          D      + + +DPPR+G
Sbjct: 336 RAAQNAARNGIAN------ACFHVANLFEDQR--------AADWAKQPWDKLLLDPPRAG 381

Query: 307 MD--IDTCKMVQGYERILYISCNPETLQENLQVLGETH--QVVRFALFDQFPYTHHMEAG 362
            D  +D     Q   RI+YISC+P +L  +  +L E H  ++    + D FP+T H+E+ 
Sbjct: 382 ADKLLDYLPHKQ-TRRIVYISCHPASLARDAGILVERHGFRLAAAGVMDMFPHTSHVESI 440

Query: 363 VMLER 367
            + ER
Sbjct: 441 ALFER 445