Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score = 88.2 bits (217), Expect = 4e-22
 Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 25/186 (13%)

Query: 188 FTQPNAKVAEKM----LEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKP 243
           F Q NA V E M    LEW      E    +L+L+CG GNF+L LA+    V+A E  + 
Sbjct: 281 FVQVNAGVNEAMVAQALEWLAPQPDER---VLDLFCGLGNFALPLARQVREVVAVEGVQT 337

Query: 244 SVEAAQFNIAANQIGNVQIIRMS-AEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDP 302
            VE A  N  +N + NVQ  +   ++  T A   K+ F               + + +DP
Sbjct: 338 MVERAAVNAVSNDLHNVQFFQADLSQPLTDAEWAKQGF---------------SAVLLDP 382

Query: 303 PRSG-MDIDTCKMVQGYERILYISCNPETL-QENLQVLGETHQVVRFALFDQFPYTHHME 360
           PR G +++       G +R++Y+SCNP TL ++ ++++ + +++ R  + D FP T H+E
Sbjct: 383 PRDGALEVVRKLATLGAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442

Query: 361 AGVMLE 366
           A  + E
Sbjct: 443 AMALFE 448