Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Variovorax sp. SCN45

 Score = 60.5 bits (145), Expect = 9e-14
 Identities = 91/369 (24%), Positives = 142/369 (38%), Gaps = 57/369 (15%)

Query: 34  LEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETREKYRVDQ--FPAASRLIND-LMPL 90
           L   E P  +YR RA   + H       ++   E + +Y  D    P   + +++ LMPL
Sbjct: 129 LRPLEGPAWHYRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQVSEMLMPL 188

Query: 91  LMDAMKGSPILRHKLFQVDFL------STLSGEILVSLLYHRQLSEEWITAAQALKQRLN 144
              A+ GS   R    Q++        ST  G I + L +   LS   I   +A      
Sbjct: 189 R--ALIGSLDARDTCPQIELACGDAPDSTKLGTIALVLRHLEPLSRADIDRLKAFAAE-- 244

Query: 145 DEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVE---------NSFTQPNAKV 195
           +EG    L  +             V+ L+  G P  Y+  E           FTQ N  +
Sbjct: 245 NEGVQWWLQAKGPD---------TVKLLEEGGSPLSYRLPEFGVTMPFKPTDFTQVNPHI 295

Query: 196 AEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAA 254
              ++  A+        + +++ +CG GNF+L LA     VL  E +   V  A  N   
Sbjct: 296 NRALVGKALRLLDVQPDERVIDWFCGLGNFTLPLASQAREVLGIEGSDTLVARATANYGT 355

Query: 255 NQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKM 314
           NQ        +S  +F       R    +  A + ++    +   VDPPR G       M
Sbjct: 356 NQPATSARRELSPAKFV-----ARNLFEMTPAML-VEDGSADKWLVDPPREGAFALAKAM 409

Query: 315 VQGYE-------------RILYISCNPETLQENLQVLGETHQV---VRFA-LFDQFPYTH 357
              ++             RI+Y+SCNP TL  +  +L   HQ      FA + + FP+T 
Sbjct: 410 ADLHQQPELCTDGWTPPKRIVYVSCNPSTLARDAGLL--VHQAGYRCTFAGVVNMFPHTA 467

Query: 358 HMEAGVMLE 366
           H+E+  + E
Sbjct: 468 HVESIAVFE 476