Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas putida KT2440

 Score =  358 bits (918), Expect = e-103
 Identities = 180/363 (49%), Positives = 248/363 (68%), Gaps = 8/363 (2%)

Query: 7   NPELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQ 66
           +P  Y  QL  K+ARL+ +   +  PE  VF+SP  +YR+RAEFR+W E    +Y MF  
Sbjct: 6   DPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHYAMFAP 65

Query: 67  ETREK-YRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYH 125
             + K   +D FP AS  IN LMP L  A + S  L ++LFQV+FL+TL+G+ ++++ YH
Sbjct: 66  GEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMITMCYH 125

Query: 126 RQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVE 185
           R L E W   A+ L + L      +++IGR++  ++V+ RDY VE L V G+ + Y+Q E
Sbjct: 126 RPLDEAWEVEARQLAEALG-----VSVIGRSKGKRLVIGRDYAVEKLDVAGRVFSYRQPE 180

Query: 186 NSFTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSV 245
            +FTQPN  V +KML WA +   E + DLLELYCGNGNF+L LA    +VLATE++K SV
Sbjct: 181 GAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEISKTSV 240

Query: 246 EAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRS 305
            AA  N+  N + NV+++R+SAEE TQA+   R F RL+  G+DL+SY+  T+FVDPPR+
Sbjct: 241 NAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLE--GIDLKSYQFGTVFVDPPRA 298

Query: 306 GMDIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVML 365
           GMD DTC++ + +ERILYISCNPETL  N+  L +TH++ R ALFDQFPYTHHME+GV+L
Sbjct: 299 GMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESGVLL 358

Query: 366 ERK 368
            R+
Sbjct: 359 VRR 361