Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas sp. DMC3

 Score =  359 bits (922), Expect = e-104
 Identities = 175/361 (48%), Positives = 250/361 (69%), Gaps = 8/361 (2%)

Query: 9   ELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQET 68
           + Y  QL  K+ RL+ +   +  PE  VF+SP+ N+R+RAEFR+W EG + +Y MF+Q+ 
Sbjct: 6   QAYAEQLEAKVTRLRDLLAPFDAPEPTVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDD 65

Query: 69  -REKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127
            R    +++FP AS  IN LMP L  A + S  L HKLFQV+FL+TL+G+ +++L YHR 
Sbjct: 66  KRTPILIEEFPIASLRINQLMPQLKAAWQASSALSHKLFQVEFLTTLAGDAMITLCYHRP 125

Query: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187
           L E W  AA  L   L      +++IGR++  + VL +DYVVE L+V+G+ + Y+Q E +
Sbjct: 126 LDEHWHAAATQLSADLG-----VSIIGRSKGKREVLGQDYVVEKLEVSGRTFSYRQPEGA 180

Query: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247
           FTQPN  V +KML WA +   +   DLLELYCGNGNF+L LA    +VLATE++K SV A
Sbjct: 181 FTQPNGTVNQKMLNWAYEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNA 240

Query: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307
           A  N++ N + NV ++R+SAEE T+A+   R F RL   G+DL+SY  +++FVDPPR+GM
Sbjct: 241 ALSNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLH--GIDLKSYEFSSVFVDPPRAGM 298

Query: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367
           D DTC++ + ++ ILYISCNP+TL  N+  L +TH++ + A+FDQFP+THHME+GV+L R
Sbjct: 299 DPDTCELTRRFDNILYISCNPDTLAANIAQLHDTHRITKCAMFDQFPWTHHMESGVLLTR 358

Query: 368 K 368
           +
Sbjct: 359 R 359