Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 77.8 bits (190), Expect = 6e-19
 Identities = 68/262 (25%), Positives = 115/262 (43%), Gaps = 29/262 (11%)

Query: 115 SGEILVSLLYHRQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQV 174
           +GE++V +  +    EE     Q L      E  +L  +  ++  +   D + V      
Sbjct: 224 TGEVMVIVQVYEDRPEEMEALMQHLAATF-PEITSLQYVVNSKGNETFHDLEVVC----Y 278

Query: 175 NGQPYVYKQVEN--------SFTQPNAKVAEKMLEWAVDCTQESKGDLL-ELYCGNGNFS 225
            G PY+++ +E         SF Q NA  A ++ +   +    +  +L+ +LY G G  +
Sbjct: 279 KGLPYIHEDMEGIKFRVGPKSFYQTNADQAYELYKKTRELANLTGNELVYDLYTGAGTIA 338

Query: 226 LALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKD 285
             +A     V+  E    ++E A+ N   N I N        ++             L D
Sbjct: 339 NFVAHQAREVIGIEYVPSAIEDAKINSQINNITNTTFYAGDMKDI------------LSD 386

Query: 286 AGVDLQSYRCNTIFVDPPRSGMDIDTCK-MVQGY-ERILYISCNPETLQENLQVLGETHQ 343
             ++    R + +  DPPR+GM  D  K ++Q +  RI+Y+SCNP T   +++ L E + 
Sbjct: 387 ELIERHG-RPDVVITDPPRAGMHEDVVKKLLQVHPNRIVYVSCNPATQARDVEWLSEKYD 445

Query: 344 VVRFALFDQFPYTHHMEAGVML 365
           V R    D FP THH+E  V+L
Sbjct: 446 VTRVQPVDMFPQTHHVENIVLL 467