Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 54.7 bits (130), Expect = 5e-12
 Identities = 83/353 (23%), Positives = 139/353 (39%), Gaps = 44/353 (12%)

Query: 38  ESPVANYRMRAEFRIWHEGDDMYYIMFNQETREKYRVDQF------PAASRLINDLMPLL 91
           E P   YR RA   + H       ++   E + +Y  D        P  S ++  L  L+
Sbjct: 147 EGPAWGYRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELI 206

Query: 92  --MDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ-LSEEWITAAQALKQRLNDEGF 148
             MDA +  P       Q++  S    ++   +L H + LSE+ +   +A   R    G 
Sbjct: 207 FGMDARETCP-------QIELAS--GDDVTALVLRHLEPLSEDDLARLRAFGAR---HGV 254

Query: 149 NLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFTQPNAKVAEKMLEWAVDCTQ 208
              L  +      +LD    V +  +             FTQ N  +   ++  A+    
Sbjct: 255 QWWLQAKGPDTVKLLDEGGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLD 314

Query: 209 ESKGD-LLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSA 267
               + +++ +CG GNF+L +A     VL  E ++  V  ++ N+A NQ G  + +  + 
Sbjct: 315 ARADERVIDWFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPLAPTT 374

Query: 268 EEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSG--------MDIDTCKMVQG-- 317
                  E   E   L   GV           VDPPR G         D+     ++G  
Sbjct: 375 FAARNLFEMTPEL--LVADGV------AQKWLVDPPREGAFALAKAIADLHQNPALRGGW 426

Query: 318 --YERILYISCNPETLQEN--LQVLGETHQVVRFALFDQFPYTHHMEAGVMLE 366
              +RI+Y+SCNP TL  +  L V    ++ V   + + F +T H+E+  + E
Sbjct: 427 TPPQRIVYVSCNPATLARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFE 479