Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Serratia liquefaciens MT49

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 85/358 (23%), Positives = 151/358 (42%), Gaps = 31/358 (8%)

Query: 10  LYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRI-WHEGDDMYYIMFNQE- 67
           L Q   A  + R+ A     +  +  V   P   YR RA   + W        + F Q  
Sbjct: 102 LQQQSKAAALVRMIARETGVTPQQEPVIAGPQYGYRRRARLGLLWQPKQQRLVMGFRQAA 161

Query: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127
           + +   V + P     +  L+  L   +    + R +L  V+ +   +G +LV  L H  
Sbjct: 162 SSDLVPVTRCPVLHPELEQLLTPLRSCLSALQVAR-RLGHVELVLADNGPVLV--LRHLD 218

Query: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRD--YVVENLQVNGQPYVYKQVE 185
             +E     QAL+     +   + L   +  ++ +      Y V+ L+++  P  + QV 
Sbjct: 219 ALKE--DDRQALQAFARTKNVTIYLAPDSDSLEKLCGETPYYQVDGLRLDFSPRDFIQVN 276

Query: 186 NSFTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSV 245
           +   Q   ++  + LEW    + +    +L+L+CG GNF+L LA+    V+  E     V
Sbjct: 277 DHVNQ---QMVAQALEWL---SIQPNDRVLDLFCGMGNFTLPLARRAAAVVGIEGVATLV 330

Query: 246 EAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRS 305
              Q+N   N++ N      + EE  +      +       G D        + +DP R+
Sbjct: 331 ANGQYNAHNNRLNNASFFHENLEEDVEQQPWAAQ-------GFD-------KVMLDPARA 376

Query: 306 GMDIDTCKMVQ-GYERILYISCNPETLQENLQV-LGETHQVVRFALFDQFPYTHHMEA 361
           G       +V+   ER++Y+SCNP TL  + +V L   +++ R  + D FP+T H+E+
Sbjct: 377 GAAGVMSHIVKLAPERVVYVSCNPTTLARDSKVLLSAGYRLARVRMLDMFPHTGHLES 434