Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 21/184 (11%)

Query: 187 SFTQPNAKVAEKMLEWAVDCT-QESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSV 245
           SF Q N  VA ++   A D   Q     + +L+CG G F L  A    ++   E+A  ++
Sbjct: 209 SFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAI 268

Query: 246 EAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRS 305
             A+ + A   +  +    + + +F  A                 Q    + + V+PPR 
Sbjct: 269 ACAKQSAAELGLTRLHFQALDSTQFATA-----------------QGETPDLVLVNPPRR 311

Query: 306 GMDIDTCK-MVQGYER-ILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGV 363
           G+    C  + Q   R I+Y SCN +T+ ++++ L   +++ R  LFD FP+T H E   
Sbjct: 312 GIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHL-PNYRIQRVQLFDMFPHTAHYEVLA 370

Query: 364 MLER 367
           +L R
Sbjct: 371 LLRR 374