Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 88/334 (26%), Positives = 148/334 (44%), Gaps = 40/334 (11%)

Query: 44  YRMRAEFRIWHEGDDMYYIMFNQE-TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILR 102
           YR RA   +    D    + F +  + +   V+Q P  +  +  L+P +   +      R
Sbjct: 127 YRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTR 186

Query: 103 HKLFQVDFLSTLSGEILVSLLYHRQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVV 162
           H L  V+ +   SG +++ L +   LS       + L++  + EG +L L   +  ++ V
Sbjct: 187 H-LGHVELVQAGSGTLMI-LRHTAPLSA---ADKEKLERFSHSEGLSLFLAPFSEILETV 241

Query: 163 LDRD--YVVENLQVNGQPYVYKQVENSFTQPNAKVAEKMLEWAVDCTQESKGDLLELYCG 220
                 Y    L++   P  + QV  +  Q   ++  + LEW +D   E +  +L+L+CG
Sbjct: 242 SGEAPWYDSHGLRLAFSPRDFIQVNEAVNQ---QMVARALEW-LDVRAEDR--VLDLFCG 295

Query: 221 NGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEE-FTQAMEGKRE 279
            GNF+L LA     V+  E     VE  + N   N + NV     + EE  T+    K  
Sbjct: 296 MGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNG 355

Query: 280 FNRLKDAGVDLQSYRCNTIFVDPPRSG-----MDIDTCKMVQGYERILYISCNPETLQEN 334
           F++               + +DP R+G       I   K +    RI+Y+SCNP TL  +
Sbjct: 356 FDK---------------VLLDPARAGATGVMRHIIKLKPI----RIVYVSCNPATLARD 396

Query: 335 LQVL-GETHQVVRFALFDQFPYTHHMEAGVMLER 367
            + L    ++V R A+ D FP+T H+E+ V+ ER
Sbjct: 397 SEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430