Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., tRNA (uracil-5-)-methyltransferase (NCBI) from Escherichia coli BW25113

 Score =  481 bits (1238), Expect = e-140
 Identities = 233/360 (64%), Positives = 294/360 (81%), Gaps = 2/360 (0%)

Query: 9   ELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQET 68
           E Y+AQLA+K+ RL++M   +S    EVF SPV++YRMRAEFRIWH+GDD+Y+I+F+Q+T
Sbjct: 9   EQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQT 68

Query: 69  REKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQL 128
           + + RVD FPAAS LIN LM  ++  ++ +P+LRHKLFQ+D+L+TLS + +VSLLYH++L
Sbjct: 69  KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKL 128

Query: 129 SEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSF 188
            +EW   A+AL+  L  +  N++LIGRA K K+ LD+DY+ E L V G+  +Y+QVENSF
Sbjct: 129 DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSF 188

Query: 189 TQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAA 248
           TQPNA +  +MLEWA+D T+ SKGDLLELYCGNGNFSLALA+NF+RVLATE+AKPSV AA
Sbjct: 189 TQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248

Query: 249 QFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMD 308
           Q+NIAAN I NVQIIRM+AEEFTQAM G REFNRL+  G+DL+SY+C TIFVDPPRSG+D
Sbjct: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ--GIDLKSYQCETIFVDPPRSGLD 306

Query: 309 IDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368
            +T KMVQ Y RILYISCNPETL +NL+ L +TH+V R ALFDQFPYTHHME GV+L  K
Sbjct: 307 SETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366